Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq72101 123 3e-23 seq70036 123 3e-23 seq39745 95.1 2e-14 seq8201 95.1 2e-14 >seq72101 Length=85746 Score = 123 bits (136), Expect = 3e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 36544 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 36603 ||| || || || || || |||||||| ||||| || ||||| |||||| ||||| | Sbjct 44438 ATTCTCGTTAACGATGCCATCACTGGCAGCAAAGAAGGCCAACACATGTGAAATAAAGTG 44497 Query 36604 TTTTTCGT--TTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 36661 || |||| ||| || || || | ||||| | || || || || | ||||||||| Sbjct 44498 CTTCTCGTCCTTGTTG--AGCTTGTCCCAATGACCCATGTCCTTGGACAGATCCACTTCC 44555 Query 36662 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 36721 || |||||||| ||||| ||||||||||| || ||||| ||||||||| || |||| Sbjct 44556 TCGACTGTCCAGAATGACGCCTCTGCCTTCTTGTACATGAGCCAGATGTCTTGGAATTGG 44615 Query 36722 ATTGGAAAAATAACAAATC 36740 ||||| || || || |||| Sbjct 44616 ATTGGGAAGATGACGAATC 44634 >seq70036 Length=130556 Score = 123 bits (136), Expect = 3e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 36544 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 36603 ||| || || || || || |||||||| ||||| |||||||| ||||| ||||| | Sbjct 51607 ATTCTCGTTGACGATGCCATCACTGGCAGCAAAGAACGCCAACACATGCGAAATAAAGTG 51548 Query 36604 TTTTTCGT--TTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 36661 || |||| ||| || || || | ||||| | || || || || | |||||| || Sbjct 51547 CTTCTCGTCCTTGTTG--AGCTTGTCCCAATGACCCATGTCCTTGGACAGATCCACCTCC 51490 Query 36662 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 36721 || |||||||| ||||| ||||||||||| || ||||| ||||||||| || |||| Sbjct 51489 TCGACTGTCCAGAATGACGCCTCTGCCTTCTTGTACATGAGCCAGATGTCTTGGAATTGG 51430 Query 36722 ATTGGAAAAATAACAAATC 36740 ||||| || || ||||||| Sbjct 51429 ATTGGGAAGATGACAAATC 51411 >seq39745 Length=16847 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 |||| || ||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 5996 TATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGATTA 5937 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900 ||||| | || || ||| || || || ||| | || | || || || | || | | Sbjct 5936 CTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCTGTCTCTACTTGGGCT 5877 Query 65901 TCTATAATCGCTTTCCA 65917 || || || |||||||| Sbjct 5876 TCAATGATTGCTTTCCA 5860 >seq8201 Length=93372 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 |||| || ||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 62756 TATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGATTA 62815 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900 ||||| | || || ||| || || || ||| | || | || || || | || | | Sbjct 62816 CTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCCGTCTCTACTTGGGCT 62875 Query 65901 TCTATAATCGCTTTCCA 65917 || || || |||||||| Sbjct 62876 TCAATGATTGCTTTCCA 62892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657550036896640