Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1757 136 4e-27 seq1554 136 4e-27 >seq1757 Length=74305 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | || | ||||||||||| || ||||| || || | Sbjct 30206 CCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGAC 30265 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| || || || |||||| |||| |||||||||||||| || || Sbjct 30266 AATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGG 30325 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| ||| ||||| | ||| | ||||| | || || ||| Sbjct 30326 ATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACC 30385 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | |||||||| || | || || ||||| ||||||||| Sbjct 30386 TCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCATA 30433 Score = 105 bits (116), Expect = 7e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | || | |||||||| ||||||||||| || ||| | Sbjct 25178 CCACCACGCAGACGCAAGACAAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAC 25237 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| || ||||| ||||| |||||| |||||||||||| || || Sbjct 25238 AATGTACGGCCATCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGA 25297 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| |||||| |||| | || | ||| ||| | || || ||| Sbjct 25298 ATGCCTTCCTTGTCTTGGATTTTGGTCTTTACATTCTCAATTGTATCGCTTGGTTCTACC 25357 Query 139718 TCAACGGT 139725 |||| ||| Sbjct 25358 TCAAGGGT 25365 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || ||||||||||| || | || | || || || ||||| ||||| ||||| Sbjct 23147 TGACCACCACGTAAACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCT 23206 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| ||||| || || || ||||| |||| |||||||||||||| || Sbjct 23207 GAAAGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGG 23266 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || |||||||| ||||| ||| ||| ||||| | ||| | ||||| | || || Sbjct 23267 GGAATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCA 23326 Query 139715 ACCTCAACGGTCACCGTCT 139733 ||||||| ||| | |||| Sbjct 23327 ACCTCAAGGGTAATGGTCT 23345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || ||||| || || || ||||| ||||| || || || ||| Sbjct 33028 GTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTGCGGCCATCTTCAAGTTGCTTTCCA 33087 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| |||||||||||||| || || ||||| || ||||| ||| || ||| Sbjct 33088 GCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCTTTC 33147 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| | || |||||||||| ||| | || ||||| || | ||| Sbjct 33148 ACATTCTCGATTGTGTCACTTGGTTCCACCTCAAGGGTGATAGTTTTGCCAGTTAGTGTT 33207 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 33208 TTGACAAAGATCTGCAT 33224 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | || | || |||||||| || ||||| || || | Sbjct 29547 CCACCACGGAGACGCAAGACGAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAC 29606 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| ||||| || ||||| |||| |||||||||||||| || || Sbjct 29607 AATGTGCGGCCATCTTCAAGCTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGG 29666 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | || | ||||| | || || ||| Sbjct 29667 ATACCTTCTTTGTCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTTGGTTCTACC 29726 Query 139718 TCAACGGTCACCGTCTTGCC 139737 |||| ||| | || ||||| Sbjct 29727 TCAAGGGTGATAGTTTTGCC 29746 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | |||| || || || || || ||||| || ||| | Sbjct 26446 CCACCACGGAGACGCAACACAAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAC 26505 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| || || || |||||| |||| |||||||||||||| || || Sbjct 26506 AATGTACGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGA 26565 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || ||| | | || | ||||| | || |||||| Sbjct 26566 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTTGGTTCCACC 26625 Query 139718 TCAACGGT 139725 |||| ||| Sbjct 26626 TCAAGGGT 26633 >seq1554 Length=107351 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | || | ||||||||||| || ||||| || || | Sbjct 10299 CCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGAC 10240 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| || || || |||||| |||| |||||||||||||| || || Sbjct 10239 AATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGG 10180 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| ||| ||||| | ||| | ||||| | || || ||| Sbjct 10179 ATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACC 10120 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | |||||||| || | || || ||||| ||||||||| Sbjct 10119 TCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCATA 10072 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || |||| |||||| || | || | || || || ||||| ||||| ||||| Sbjct 13426 TGACCACCACGTAGACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCT 13367 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| ||||| || || || ||||| |||||| |||||||||||| || Sbjct 13366 GAAAGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGG 13307 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||||||||| || ||| || ||||| | ||| | ||||| | || || Sbjct 13306 GGGATGCCTTCTTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTGTCACTTGGTTCA 13247 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||| ||| | |||||||| || | || || ||||| ||||||||| Sbjct 13246 ACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCATA 13196 Score = 105 bits (116), Expect = 7e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | || | || || || ||||||||||| || ||| | Sbjct 18050 CCACCACGGAGACGCAAGACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGAC 17991 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| || ||||| ||||| |||| |||||||||||||| || || Sbjct 17990 AATGTGCGGCCATCTTCAAGTTGTTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGA 17931 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| |||||| |||| | || | ||||||| | || || ||| Sbjct 17930 ATGCCTTCCTTGTCTTGGATTTTGGTCTTTACATTCTCAATTGTGTCGCTTGGTTCTACC 17871 Query 139718 TCAACGGT 139725 |||| ||| Sbjct 17870 TCAAGGGT 17863 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || ||||| || || || ||||| ||||| || || || ||| Sbjct 8214 GTGGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGGCCATCTTCAAGTTGCTTTCCA 8155 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| |||||||||||||| || || ||||| || ||||| ||| || ||| Sbjct 8154 GCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCTTTC 8095 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| | || |||||||||| ||| | || ||||| || | ||| Sbjct 8094 ACATTCTCAATTGTGTCACTTGGTTCCACCTCAAGGGTGATAGTTTTGCCAGTTAGTGTT 8035 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 8034 TTGACAAAGATCTGCAT 8018 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | || | || |||||||| |||||||| || || | Sbjct 10071 CCACCACGGAGACGCAAGACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAC 10012 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| || || || ||||| |||| |||||||||||||| || || Sbjct 10011 AATGTGCGGCCATCTTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGGGGG 9952 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || || | | || | ||||| | || || ||| Sbjct 9951 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTTGGTTCTACC 9892 Query 139718 TCAACGGTCACCGTCTTGCC 139737 |||| ||| | || ||||| Sbjct 9891 TCAAGGGTGATAGTTTTGCC 9872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495594624243200