Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq72101 129 8e-25 seq70036 129 8e-25 seq21453 113 6e-20 seq37837 107 3e-18 seq39745 86.0 9e-12 seq8201 86.0 9e-12 >seq72101 Length=85746 Score = 129 bits (142), Expect = 8e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 ||| || || || || || |||||||| ||||| || ||||| |||||| ||||| || Sbjct 44438 ATTCTCGTTAACGATGCCATCACTGGCAGCAAAGAAGGCCAACACATGTGAAATAAAGTG 44497 Query 50406 TTTTTCGTTGGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTT 50464 || |||| |||| || || | ||||| | || || || || | ||| ||||| | Sbjct 44498 CTTCTCGTCCT-TGTTGAGCTTGTCCCAATGACCCATGTCCTTGGACAGATCCACTTCCT 44556 Query 50465 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGA 50524 | |||||||| ||||| ||||||||||| || ||||| ||||||||| || |||||| Sbjct 44557 CGACTGTCCAGAATGACGCCTCTGCCTTCTTGTACATGAGCCAGATGTCTTGGAATTGGA 44616 Query 50525 TTGGGAAAATAACAAATC 50542 ||||||| || || |||| Sbjct 44617 TTGGGAAGATGACGAATC 44634 >seq70036 Length=130556 Score = 129 bits (142), Expect = 8e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 ||| || || || || || |||||||| ||||| |||||||| ||||| ||||| || Sbjct 51607 ATTCTCGTTGACGATGCCATCACTGGCAGCAAAGAACGCCAACACATGCGAAATAAAGTG 51548 Query 50406 TTTTTCGTTGGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTT 50464 || |||| |||| || || | ||||| | || || || || | ||| || || | Sbjct 51547 CTTCTCGTCCT-TGTTGAGCTTGTCCCAATGACCCATGTCCTTGGACAGATCCACCTCCT 51489 Query 50465 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGA 50524 | |||||||| ||||| ||||||||||| || ||||| ||||||||| || |||||| Sbjct 51488 CGACTGTCCAGAATGACGCCTCTGCCTTCTTGTACATGAGCCAGATGTCTTGGAATTGGA 51429 Query 50525 TTGGGAAAATAACAAATC 50542 ||||||| || ||||||| Sbjct 51428 TTGGGAAGATGACAAATC 51411 >seq21453 Length=27831 Score = 113 bits (124), Expect = 6e-20 Identities = 115/147 (78%), Gaps = 5/147 (3%) Strand=Plus/Minus Query 50037 CTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGC 50096 |||| | | ||||||||| | ||||||||||| || || |||||||| ||||||||||| Sbjct 3478 CTTTCTTAACCAAAATATAGCTGCAAATGACCCTGAGAAAAAGATTCCCTCTACTGCGGC 3419 Query 50097 AAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGT---CATGTATCCACTTTTGAGCCC 50152 ||||||||||||||| || ||| ||| | ||| | | |||| ||||| || |||| Sbjct 3418 AAAGGCAACAAGTCTTTCACCA-AACGGTGCGTTATCCCCATGGATCCATTTCAACGCCC 3360 Query 50153 AATCGGCCTTCTTTTTTACACAAGGCA 50179 | ||||| ||| | || ||||| |||| Sbjct 3359 ACTCGGCTTTCCTCTTGACACATGGCA 3333 >seq37837 Length=14246 Score = 107 bits (118), Expect = 3e-18 Identities = 114/148 (77%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 50037 CTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGC 50096 |||||| | ||||||||| | ||||||||||| || || |||||||| ||||||||||| Sbjct 9317 CTTTTTTAACCAAAATATAGCTGCAAATGACCCTGAGAAAAAGATTCCCTCTACTGCGGC 9376 Query 50097 AAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT-----CATGTATCCACTTTTGAGCC 50151 || ||||||||||| || ||| ||| || || || |||| ||||| || ||| Sbjct 9377 GAAAGCAACAAGTCTTTCACCA-AAC-GGTGCCGTATCCCCATGGATCCATTTCAACGCC 9434 Query 50152 CAATCGGCCTTCTTTTTTACACAAGGCA 50179 || ||||| ||| | || ||||| |||| Sbjct 9435 CACTCGGCTTTCCTCTTCACACATGGCA 9462 >seq39745 Length=16847 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| || |||||||||||| || |||||||| || |||||||| | || ||||||||| Sbjct 5996 TATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGATTA 5937 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||||| | || || ||| || || || ||| | || | || || || | || | | Sbjct 5936 CTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCTGTCTCTACTTGGGCT 5877 Query 79780 TCTATAATCGCTTTCCA 79796 || || || |||||||| Sbjct 5876 TCAATGATTGCTTTCCA 5860 >seq8201 Length=93372 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| || |||||||||||| || |||||||| || |||||||| | || ||||||||| Sbjct 62756 TATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGATTA 62815 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||||| | || || ||| || || || ||| | || | || || || | || | | Sbjct 62816 CTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCCGTCTCTACTTGGGCT 62875 Query 79780 TCTATAATCGCTTTCCA 79796 || || || |||||||| Sbjct 62876 TCAATGATTGCTTTCCA 62892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717589174061440