Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq72101 100 3e-16 seq70036 98.7 1e-15 seq37837 86.0 6e-12 seq21453 86.0 6e-12 >seq72101 Length=85746 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 |||||||| ||||| |||||||| |||||||| ||||| ||||||||||| || ||||| Sbjct 43114 ATGTATGTGTCAATGAGTAAGCTGTACATTTCTGAGTGGATGTTTTCCATGGCAATCTGG 43173 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTC 14254 || ||||| ||||| || ||||| | | || ||||| | ||||||||| Sbjct 43174 AACCCATAGAAGCACCTTGCTTCTGTGCTCTGCACTTCTTGGCTAAATCTTTC 43226 >seq70036 Length=130556 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 14124 TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATG 14183 ||||||| ||| || | | ||||||| ||||| |||||||| |||||||| ||||| ||| Sbjct 52293 TTCTCTTGAGT-CTCGGA-TGTATGTGTCAATCAGTAAGCTGTACATTTCTGAGTGGATG 52236 Query 14184 TTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 |||||||| || ||||| || ||||| ||||| || ||||| Sbjct 52235 TTTTCCATTGCAATCTGGAATCCATAGAAGCACCTTGCTTC 52195 >seq37837 Length=14246 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 || ||||||||||| ||||| || |||||||| || || || ||||| ||||| || || Sbjct 4722 TTGTTGATATTCACCGACTCTCTTCTCAAAGAAATTGGTCTTGCCTTCTAGTGAGATGTT 4781 Query 13640 TTCCATAAAATCAAATGGATTT 13661 |||||| ||||||||||| ||| Sbjct 4782 TTCCATGAAATCAAATGGGTTT 4803 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 13950 ttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCA 14009 ||||||||||||||||| || ||||||||||| || || || |||||||| ||||| || Sbjct 9318 TTTTTTAACCAAAATATAGCTGCAAATGACCCTGAGAAAAAGATTCCCTCTACTGCGGCG 9377 Query 14010 AACGCTATTAATCGTTCTCCAAACGATGC 14038 || || | | || ||| ||||||| ||| Sbjct 9378 AAAGCAACAAGTCTTTCACCAAACGGTGC 9406 >seq21453 Length=27831 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 13950 ttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCA 14009 ||| ||||||||||||| || ||||||||||| || || || |||||||| ||||| ||| Sbjct 3477 TTTCTTAACCAAAATATAGCTGCAAATGACCCTGAGAAAAAGATTCCCTCTACTGCGGCA 3418 Query 14010 AACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 || || | | || ||| ||||||| ||| || Sbjct 3417 AAGGCAACAAGTCTTTCACCAAACGGTGCGTT 3386 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 || ||||||||||| ||||| || |||||||| || || || ||||| ||||| || || Sbjct 7121 TTGTTGATATTCACCGACTCTCTTCTCAAAGAAATTGGTCTTGCCTTCTAGTGAGATGTT 7062 Query 13640 TTCCATAAAATCAAATGGATTT 13661 |||||| ||||||||||| ||| Sbjct 7061 TTCCATGAAATCAAATGGGTTT 7040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479274081366400