Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq21453 98.7 1e-15 seq37837 95.1 2e-14 seq39745 89.7 7e-13 seq8201 89.7 7e-13 >seq21453 Length=27831 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/147 (76%), Gaps = 5/147 (3%) Strand=Plus/Minus Query 42142 CTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGC 42201 |||| | | ||||||||||| |||||||| || || || |||||||| |||||||| || Sbjct 3478 CTTTCTTAACCAAAATATAGCTGCAAATGACCCTGAGAAAAAGATTCCCTCTACTGCGGC 3419 Query 42202 AAAGGCAATAAGTCTCTCTCCATAACCG-GCACTGT---CATGTATCCACTTTTGAGCCC 42257 |||||||| |||||| || ||| ||| | || | | |||| ||||| || |||| Sbjct 3418 AAAGGCAACAAGTCTTTCACCA-AACGGTGCGTTATCCCCATGGATCCATTTCAACGCCC 3360 Query 42258 AATCGGCCTTCTTTTTTACACAAGGCA 42284 | ||||| ||| | || ||||| |||| Sbjct 3359 ACTCGGCTTTCCTCTTGACACATGGCA 3333 >seq37837 Length=14246 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/147 (76%), Gaps = 5/147 (3%) Strand=Plus/Plus Query 42142 CTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGC 42201 |||||| | ||||||||||| |||||||| || || || |||||||| |||||||| || Sbjct 9317 CTTTTTTAACCAAAATATAGCTGCAAATGACCCTGAGAAAAAGATTCCCTCTACTGCGGC 9376 Query 42202 AAAGGCAATAAGTCTCTCTCCATAACCG-GCACTGT---CATGTATCCACTTTTGAGCCC 42257 || |||| |||||| || ||| ||| | || | | |||| ||||| || |||| Sbjct 9377 GAAAGCAACAAGTCTTTCACCA-AACGGTGCCGTATCCCCATGGATCCATTTCAACGCCC 9435 Query 42258 AATCGGCCTTCTTTTTTACACAAGGCA 42284 | ||||| ||| | || ||||| |||| Sbjct 9436 ACTCGGCTTTCCTCTTCACACATGGCA 9462 >seq39745 Length=16847 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| || ||||||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 5996 TATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGATTA 5937 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||||| | || || ||| || || || || | || | || || || | || | | Sbjct 5936 CTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCTGTCTCTACTTGGGCT 5877 Query 71863 TCTATAATCGCTTTCCA 71879 || || || |||||||| Sbjct 5876 TCAATGATTGCTTTCCA 5860 >seq8201 Length=93372 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| || ||||||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 62756 TATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGATTA 62815 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||||| | || || ||| || || || || | || | || || || | || | | Sbjct 62816 CTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCCGTCTCTACTTGGGCT 62875 Query 71863 TCTATAATCGCTTTCCA 71879 || || || |||||||| Sbjct 62876 TCAATGATTGCTTTCCA 62892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670504168088960