Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1757 111 1e-19 seq1554 105 5e-18 seq22013 91.5 1e-13 >seq1757 Length=74305 Score = 111 bits (122), Expect = 1e-19 Identities = 139/189 (74%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || | ||| || || || || ||||| |||||||| ||| | ||| || | | Sbjct 25193 AAGACAAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGG--ACAATGTACGGCCAT 25250 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | |||||| |||||| | ||||||||||| || || ||||| ||||| |||| Sbjct 25251 CTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCCTTGT 25310 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | |||||| |||||||| | || || |||||||| |||||| || | ||| || | Sbjct 25311 CTTGGATTTTGGTCTTTACATTCTCAATTGTATCGCTTGGTTCTACCTCAAGGGTGATAG 25370 Query 15330 TTTTACCTG 15338 ||||||||| Sbjct 25371 TTTTACCTG 25379 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || | ||| || || || ||||| || |||||||| || | | ||| || | | Sbjct 30221 AAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTC--TGACAATGTGCGGCCAT 30278 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | ||| || ||||| | || | |||||| || || || || |||||||||| Sbjct 30279 CTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTTGT 30338 Query 15270 CACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 | || |||||| |||||| |||| || || || || ||| || || | ||||||| Sbjct 30339 CTTGGATCTTTGCT-TTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATG 30397 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || || || ||||||||| Sbjct 30398 GTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCATA 30433 >seq1554 Length=107351 Score = 105 bits (116), Expect = 5e-18 Identities = 138/189 (73%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || | ||| ||||| || || ||||| |||||||| ||| | ||| || | | Sbjct 18035 AAGACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGG--ACAATGTGCGGCCAT 17978 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | |||||| |||||| | || | |||||| || || ||||| ||||| |||| Sbjct 17977 CTTCAAGTTGTTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGT 17918 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | |||||| |||||||| | || || || ||||| |||||| || | ||| |||| Sbjct 17917 CTTGGATTTTGGTCTTTACATTCTCAATTGTGTCGCTTGGTTCTACCTCAAGGGTTATGG 17858 Query 15330 TTTTACCTG 15338 ||||||||| Sbjct 17857 TTTTACCTG 17849 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| || || || || ||||| ||||||||||| || | | | ||| Sbjct 13408 AAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCTGAAAGGGTGCGACCATCT 13349 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| || |||||| | ||||||||||| || || || || |||||||| || Sbjct 13348 TCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGGATGCCTTCTTTATCT 13289 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || || ||| |||||| |||| || || || || ||| || || | ||||||||| Sbjct 13288 TGGATCTTAGCT-TTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATGGT 13230 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || || ||||||||| Sbjct 13229 CTTGCCAGTGAGGGTCTTGACGAAGATTTGCATA 13196 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || | ||| || || || ||||| || |||||||| || | | ||| || | | Sbjct 10284 AAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTC--TGACAATGTGCGGCCAT 10227 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | ||| || ||||| | || | |||||| || || || || |||||||||| Sbjct 10226 CTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTTGT 10167 Query 15270 CACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 | || |||||| |||||| |||| || || || || ||| || || | ||||||| Sbjct 10166 CTTGGATCTTTGCT-TTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATG 10108 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || || || ||||||||| Sbjct 10107 GTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCATA 10072 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CG 15208 ||| || | ||| ||||| || || ||||| |||||||| || | | ||| || | Sbjct 13181 TAATACAAGATGGAGGGTAGATTCCTTTTGAATGTTGTAGTC--TGACAATGTGCGGCCA 13124 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | ||| || |||||| | ||||||||||| || || || || ||||| ||| Sbjct 13123 TCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGGATGCCTTCCTTG 13064 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || || ||| || ||| | || ||||| || || ||| || || | ||||||| Sbjct 13063 TCTTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTTGGTTCAACCTCCAGGGTAATG 13004 Query 15329 GTTTTACCTG 15338 |||||||||| Sbjct 13003 GTTTTACCTG 12994 >seq22013 Length=127307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 15153 AAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG-TCT 15211 |||| | ||||| ||||| ||||| || ||||||||||| | ||||| || ||| Sbjct 37420 AAACAAGATGAATTGTGGATTCTTTCTGAATGTTGTAATCCAACA-AATTCAAGCCATCT 37478 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| || ||| | | | ||| || || || ||||| ||||||||||| Sbjct 37479 TCAAGCTGTTTACCTGCGAAGAGAAGACGCTGCTGATCTGAGGGAATGCCTTCTTTGTCT 37538 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| | |||||||| || || ||| ||| | | |||||||||| Sbjct 37539 TGGATCTTGGCCTTCACATTCTCTATGGTGTCACTCAGTTCAACACCAAGGGTAATGGTT 37598 Query 15332 TTACCTG 15338 ||||||| Sbjct 37599 TTACCTG 37605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361845073389936