Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq37837 89.7 4e-13 seq70036 86.0 5e-12 seq72101 84.2 2e-11 >seq37837 Length=14246 Score = 89.7 bits (98), Expect = 4e-13 Identities = 126/171 (74%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 13459 AATATTT---TCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG-AA 13514 ||||||| ||||| || || ||||| ||||||||||| ||||||| | ||||| | Sbjct 11249 AATATTTACCTCCATTGCAATCTGGAATCCATAAAAACACTTAGCCTCCGGAACCTGCAC 11308 Query 13515 CTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 || | || |||| | | || | |||||||| || || || |||||||| || || || | Sbjct 11309 CTCCTGACTAAACT-TCTCAACCAAGTTTTCATTGACAATGCCGTCACTGGCTGCGAAGA 11367 Query 13575 aaGCAAGTATGTGCTTAATAAAttttttttC-GTTTTCTGACAACTTTAAC 13624 | || |||||||| |||||| | | ||| | |||||| |||| |||| Sbjct 11368 AGGCTAGTATGTGAGAAATAAAGTGCTGTTCTGATTTCTG-CAACAATAAC 11417 >seq70036 Length=130556 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || | ||| || || || |||| ||| ||||| | || | || || Sbjct 53203 TCATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCTTCTTC 53144 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || ||||||||||| |||||||| ||||| || || || || || || || || Sbjct 53143 AACCAGAAGATAGCAGCAAAGGAACCCGAGAAAAAGATGCCCTCGACAGCGGCGAAAGCA 53084 Query 13295 ATCAACCTTTCACCATACGT 13314 | || | ||||||| |||| Sbjct 53083 ACCACTCGTTCACCAAACGT 53064 >seq72101 Length=85746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || | ||| || || || |||| ||| ||||| | || | || || Sbjct 42105 TCATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCTTCTTC 42164 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || ||||||||||| ||||| || ||||| || || || || || || || || Sbjct 42165 AACCAGAAGATAGCAGCAAAGGAACCTGAGAAAAAGATGCCCTCGACAGCGGCGAAAGCA 42224 Query 13295 ATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCT 13354 | || | ||||||| |||| ||| | | | ||||| || ||||| | ||| Sbjct 42225 ACCACTCGTTCACCAAACGTGGCATTGTCAGCATTGATCCAGTTGAGTGCCCAATCTGCC 42284 Query 13355 TTTTGTTTAAC 13365 || ||||| || Sbjct 42285 TTCTGTTTGAC 42295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430584799341792