Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq42905 87.8 9e-13 seq40306 86.0 3e-12 seq15284 86.0 3e-12 >seq42905 Length=24439 Score = 87.8 bits (96), Expect = 9e-13 Identities = 76/93 (82%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| || |||||| || ||||| ||| || ||||||| ||||| |||||||||||| Sbjct 4207 AATGAAGAAAAAA-CA---TGGCCATTGAGGGGCTCGAACCCTCGACATTCGCGTTATTA 4152 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||| |||||||||| |||| Sbjct 4151 GCACGACGCTCTAACCGACTGAGCTAAACGGCC 4119 >seq40306 Length=17400 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| || ||||||| ||||| |||||||||||||||||||||||| ||| || Sbjct 3320 TGGCCATTGAGGGGCTCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAACCGAC 3379 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 3380 TGAGCTAAACGGCC 3393 >seq15284 Length=27254 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| || ||||||| ||||| |||||||||||||||||||||||| ||| || Sbjct 10257 TGGCCATTGAGGGGCTCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAACCGAC 10198 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 10197 TGAGCTAAACGGCC 10184 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261249962600896