Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1757 102 7e-17 seq1554 98.7 9e-16 >seq1757 Length=74305 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| || || || ||| | ||| || || || ||||| Sbjct 33028 GTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTGCGGCCATCTTCAAGTTGCTTTCCA 33087 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | |||||||||||| ||||| || || ||||| | || || || || Sbjct 33088 GCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCTTTC 33147 Query 94931 ACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 || ||| |||||| | ||| || || |||| ||||| ||||| ||||| || || Sbjct 33148 ACATTCTCGATTGTGTCA-CTTGGTTCCACCTCAAGGGTGATAGTTTTGCCAGTTAGTGT 33206 Query 94990 TTTCACAAAGATCTGCAT 95007 ||| |||||||||||||| Sbjct 33207 TTTGACAAAGATCTGCAT 33224 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || | || | |||||| || || || | ||| || || || ||| | | Sbjct 30218 CGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCCA 30277 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || ||||| ||||||| | | |||||||||||| || || ||||||||| Sbjct 30278 TCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTTG 30337 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | || ||||| || || | | ||||||| | ||| || || |||| || || Sbjct 30338 TCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCA-CTTGGTTCAACCTCAAGGGTAAT 30396 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || || || ||||| ||||| Sbjct 30397 GGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 30432 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || | || | |||||| |||||||| | ||| || ||| || || | | Sbjct 25190 CGCAAGACAAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTACGGCCA 25249 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || |||||||| | ||||| || | |||||||||||| ||||| ||||| ||| Sbjct 25250 TCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCCTTG 25309 Query 94913 TCATAAATTTTTGCCTTGAC 94932 || | ||||| | ||| || Sbjct 25310 TCTTGGATTTTGGTCTTTAC 25329 >seq1554 Length=107351 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| || || || ||| | ||| || || || ||||| Sbjct 8214 GTGGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGGCCATCTTCAAGTTGCTTTCCA 8155 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | |||||||||||| ||||| || || ||||| | || || || || Sbjct 8154 GCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCTTTC 8095 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 || | | |||||| | |||| | || |||| ||||| ||||| ||||| || || Sbjct 8094 ACATTCTCAATTGTGTCA-CTTGGTTCCACCTCAAGGGTGATAGTTTTGCCAGTTAGTGT 8036 Query 94990 TTTCACAAAGATCTGCAT 95007 ||| |||||||||||||| Sbjct 8035 TTTGACAAAGATCTGCAT 8018 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| || | || | ||| ||||||||||| | ||| ||||| | | || || || Sbjct 13411 CGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATC--TGAAAGGGTGCGAC 13354 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| || || || ||||| | ||||| || | |||||||||||| || || ||||||| Sbjct 13353 CATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGGATGCCTTCTT 13294 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTG 94969 | || | || || || || || | | ||||||| | ||| || || |||| || Sbjct 13293 TATCTTGGATCTTAGCTTTTACATTTTCAATAGTGTCA-CTTGGTTCAACCTCAAGGGTA 13235 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || ||||| || || || || ||||| ||||| Sbjct 13234 ATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 13197 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || | || | |||||| || || || | ||| || || || ||| | | Sbjct 10287 CGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCCA 10228 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || ||||| ||||||| | | |||||||||||| || || ||||||||| Sbjct 10227 TCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTTG 10168 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | || ||||| || || | | ||||||| | ||| || || |||| || || Sbjct 10167 TCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCA-CTTGGTTCAACCTCAAGGGTAAT 10109 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || || || ||||| ||||| Sbjct 10108 GGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 10073 Score = 82.4 bits (90), Expect = 7e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || | || | || ||||||||||| | ||| || ||| || ||| | | Sbjct 18038 CGCAAGACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGACAATGTGCGGCCA 17979 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || |||||||| | ||||| | | |||||||||||| ||||| ||||| ||| Sbjct 17978 TCTTCAAGTTGTTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTG 17919 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | ||||| | ||| || | | ||||| || ||| || || |||| || || Sbjct 17918 TCTTGGATTTTGGTCTTTACATTCTCAATTGTGTC-GCTTGGTTCTACCTCAAGGGTTAT 17860 Query 94972 GGTTTTTCC 94980 |||||| || Sbjct 17859 GGTTTTACC 17851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447867026866560