Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq72101 131 2e-25 seq70036 131 2e-25 seq39745 89.7 6e-13 seq8201 89.7 6e-13 >seq72101 Length=85746 Score = 131 bits (144), Expect = 2e-25 Identities = 166/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 33690 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33749 ||| || || || || || |||||||| ||||| || ||||| |||||| ||||| | Sbjct 44438 ATTCTCGTTAACGATGCCATCACTGGCAGCAAAGAAGGCCAACACATGTGAAATAAAGTG 44497 Query 33750 TTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTT 33808 || ||||| |||| || || | ||||| | || || || || | ||| ||||| | Sbjct 44498 CTTCTCGTCCT-TGTTGAGCTTGTCCCAATGACCCATGTCCTTGGACAGATCCACTTCCT 44556 Query 33809 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGA 33868 | |||||||| ||||| ||||||||||| || |||||| ||||||||| | |||||| Sbjct 44557 CGACTGTCCAGAATGACGCCTCTGCCTTCTTGTACATGAGCCAGATGTCTTGGAATTGGA 44616 Query 33869 TTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATGGGTTC 33914 ||||||| || || |||| | ||||| | ||| | |||||| Sbjct 44617 TTGGGAAGATGACGAATCGACGGGGATTCTCTCTAAGTAGGGGTTC 44662 >seq70036 Length=130556 Score = 131 bits (144), Expect = 2e-25 Identities = 166/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 33690 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33749 ||| || || || || || |||||||| ||||| |||||||| ||||| ||||| | Sbjct 51607 ATTCTCGTTGACGATGCCATCACTGGCAGCAAAGAACGCCAACACATGCGAAATAAAGTG 51548 Query 33750 TTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTT 33808 || ||||| |||| || || | ||||| | || || || || | ||| || || | Sbjct 51547 CTTCTCGTCCT-TGTTGAGCTTGTCCCAATGACCCATGTCCTTGGACAGATCCACCTCCT 51489 Query 33809 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGA 33868 | |||||||| ||||| ||||||||||| || |||||| ||||||||| | |||||| Sbjct 51488 CGACTGTCCAGAATGACGCCTCTGCCTTCTTGTACATGAGCCAGATGTCTTGGAATTGGA 51429 Query 33869 TTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATGGGTTC 33914 ||||||| || ||||||| | ||||| | ||| | |||||| Sbjct 51428 TTGGGAAGATGACAAATCGACGGGGATTCTCTCTAAGTAGGGGTTC 51383 >seq39745 Length=16847 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 |||| || ||| |||||||||||||||||||| ||||| ||||| | || ||||||||| Sbjct 5996 TATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGATTA 5937 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||||| | || || ||| || || || ||| | || | || || || | || | | Sbjct 5936 CTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCTGTCTCTACTTGGGCT 5877 Query 63057 TCTATAATCGCTTTCCA 63073 || || || |||||||| Sbjct 5876 TCAATGATTGCTTTCCA 5860 >seq8201 Length=93372 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 |||| || ||| |||||||||||||||||||| ||||| ||||| | || ||||||||| Sbjct 62756 TATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGATTA 62815 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||||| | || || ||| || || || ||| | || | || || || | || | | Sbjct 62816 CTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCCGTCTCTACTTGGGCT 62875 Query 63057 TCTATAATCGCTTTCCA 63073 || || || |||||||| Sbjct 62876 TCAATGATTGCTTTCCA 62892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622357767359360