Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq39745 91.5 1e-13 seq8201 91.5 1e-13 seq1757 91.5 1e-13 seq1554 89.7 5e-13 >seq39745 Length=16847 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||||| ||| || || | ||| | ||| |||||||||||||||||||| || || |||| Sbjct 5998 TGTATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGAT 5939 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTG 145785 |||| ||||| ||||| || ||||| |||||||| || || ||||| || || Sbjct 5938 TACTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCTGTCTCTACTTG 5881 >seq8201 Length=93372 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||||| ||| || || | ||| | ||| |||||||||||||||||||| || || |||| Sbjct 62754 TGTATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGAT 62813 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTG 145785 |||| ||||| ||||| || ||||| |||||||| || || ||||| || || Sbjct 62814 TACTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCCGTCTCTACTTG 62871 >seq1757 Length=74305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | ||| | || |||||||||||||||||||| ||| | Sbjct 25178 CCACCACGCAGACGCAAGACAAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAC 25237 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || ||| |||| ||||| ||||| || || || Sbjct 25238 AATGTACGGCCATCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGA 25297 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| ||| | | ||| | |||||| | | || | Sbjct 25298 ATGCCTTCCTTGTCTTGGATTTTGGTCTTTACATTCTCAATTGTATCGCTTGGTTCTACC 25357 Query 131188 TCGACGGTAACGGTTTTACC 131207 || | ||| | |||||||| Sbjct 25358 TCAAGGGTGATAGTTTTACC 25377 >seq1554 Length=107351 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | || || |||||||| ||||||||||| Sbjct 13423 CCACCACGTAGACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCTGAA 13364 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || || ||||| || ||| |||| ||||| ||||| || || ||| Sbjct 13363 AGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGG 13304 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || ||| || || | | || | ||| || | | || | Sbjct 13303 ATGCCTTCTTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACC 13244 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || || || || ||||| || ||||| Sbjct 13243 TCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 13197 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | ||| || ||||||||||||||||| ||| | Sbjct 18050 CCACCACGGAGACGCAAGACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGAC 17991 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || || || || ||| |||| | ||| ||||| || || || Sbjct 17990 AATGTGCGGCCATCTTCAAGTTGTTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGA 17931 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| ||| | | ||| | || ||| | | || | Sbjct 17930 ATGCCTTCCTTGTCTTGGATTTTGGTCTTTACATTCTCAATTGTGTCGCTTGGTTCTACC 17871 Query 131188 TCGACGGTAACGGTTTTACC 131207 || | ||| | ||||||||| Sbjct 17870 TCAAGGGTTATGGTTTTACC 17851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| | || | ||| | ||| || ||||||||||||||||| || | Sbjct 13195 CCACCACGAAGACGTAATACAAGATGGAGGGTAGATTCCTTTTGAATGTTGTAGTCTGAC 13136 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || ||||| || ||| |||| ||||| ||||| || || ||| Sbjct 13135 AATGTGCGGCCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGG 13076 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 13075 ATGCCTTCCTTGTC 13062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471566181488640