Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1757 95.1 1e-14 seq1554 95.1 1e-14 seq75505 82.4 6e-11 seq17158 82.4 6e-11 >seq1757 Length=74305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||| || ||||| ||||| || ||||||||||| | | Sbjct 32998 CCACCACGGAGACGCAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGAC 33057 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | ||| || || ||| | ||||| || || || || || Sbjct 33058 AATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGA 33117 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| ||||| | | | ||||| | || ||| Sbjct 33118 ATGCCCTCCTTGTCTTGGATCTTGGCT--TTCACATTCTCGATTGTGTCACTTGGTTCCA 33175 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||| ||||| || || || ||||||||||| |||||||||||| Sbjct 33176 CCTCAAGGGTGATAGTTTTGCCAGTTAGTGTTTTGACAAAGATCTGCATTTTG 33228 >seq1554 Length=107351 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||| || ||||| ||||| || ||||||||||| | | Sbjct 8244 CCACCACGGAGACGCAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCGAC 8185 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | ||| || || ||| | ||||| || || || || || Sbjct 8184 AATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGA 8125 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| ||||| | | | ||||| | || ||| Sbjct 8124 ATGCCCTCCTTGTCTTGGATCTTGGCT--TTCACATTCTCAATTGTGTCACTTGGTTCCA 8067 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||| ||||| || || || ||||||||||| |||||||||||| Sbjct 8066 CCTCAAGGGTGATAGTTTTGCCAGTTAGTGTTTTGACAAAGATCTGCATTTTG 8014 >seq75505 Length=81545 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || |||||||| | ||| || ||||| ||||| || ||||||||||| | | Sbjct 77890 CCACCACGAAGTCTCAGTACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 77949 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | |||| | || ||||| |||||||| ||| | || |||| ||| ||||| Sbjct 77950 AAGGTTCGTCCATCTTCCAACTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTC 78002 >seq17158 Length=148548 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || |||||||| | ||| || ||||| ||||| || ||||||||||| | | Sbjct 118865 CCACCACGAAGTCTCAGTACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 118924 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | |||| | || ||||| |||||||| ||| | || |||| ||| ||||| Sbjct 118925 AAGGTTCGTCCATCTTCCAACTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTC 118977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404714288091040