Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq29349 131 1e-25 seq1757 107 1e-18 seq32150 102 5e-17 seq1554 102 5e-17 seq25551 100 2e-16 seq29514 98.7 7e-16 seq75604 96.9 2e-15 seq64223 95.1 8e-15 seq18034 82.4 5e-11 seq4257 82.4 5e-11 >seq29349 Length=37262 Score = 131 bits (144), Expect = 1e-25 Identities = 179/250 (72%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 6235 AGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTA 6294 ||||||| ||||| || || || || || || || |||| || ||||| || |||| | Sbjct 22897 AGGTCGAAGGTAAAGGCAATGGAATCAAGACTGTTATTGCAAATATGCCAGAGGTCGGCA 22956 Query 6295 AGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTC 6354 | || || || | || | || ||||| |||| || || || || || || || | Sbjct 22957 AAGCACTGGGCAGGCCACCAACGTACCCTTGCAAATTCTTTGGCTGTGAGCTGGGTGCGC 23016 Query 6355 AGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCA 6414 | || |||||||| |||||||||||||||||| || ||||| || ||| || ||| | Sbjct 23017 AAACCCAGTTTGACTTCAAAAACGAGCGCTTCATAGTCAACGGCTCCCATCACCCTGATA 23076 Query 6415 AGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATA 6474 | || ||| | | || || || ||||||||||||||||| || | || || |||| Sbjct 23077 AACTCCAGCAACTCCTGGATATATTCATTCGCAAGTTTGTGCTCTGCCCAGAGTGTGATA 23136 Query 6475 ACCCGGAGAC 6484 |||| ||||| Sbjct 23137 ACCCAGAGAC 23146 >seq1757 Length=74305 Score = 107 bits (118), Expect = 1e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || |||||| || | ||| ||||| |||||||||||| ||||| || | Sbjct 25176 TACCACCACGCAGACGCAAGACAAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGG 25235 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | ||||||||| || || || | ||||| ||||| | || Sbjct 25236 ACAATGTACGGCCATCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGG 25295 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| ||||| ||||| ||| ||||||| | ||||| | ||| | Sbjct 25296 GAATGCCTTCCTTGTCTTGGATTTTGGTCTTTACATTCTCAATTGTATCGCTTGGTTCTA 25355 Query 38269 CTTCTAATGTAATAGTTTTACC 38290 | || | || ||||||||||| Sbjct 25356 CCTCAAGGGTGATAGTTTTACC 25377 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| || | ||| ||||| ||| || || || ||||| || | Sbjct 30204 TACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTG 30263 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | ||| ||||| ||||| || || ||||| ||||| | || Sbjct 30264 ACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGG 30323 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||||| || ||| || ||||| | | ||| || | ||||| Sbjct 30324 GGATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAA 30383 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || || || || | ||| || ||||| || ||||| Sbjct 30384 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 30432 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| || | |||||||||| ||| || || || ||||| || | Sbjct 31924 TACCACCACGAAGACGCAAGACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 31983 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | ||| ||||| || || || || || || ||||| | || Sbjct 31984 ACAATGTTCGGCCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGG 32043 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| || || ||| ||||||| | || || | ||| | Sbjct 32044 GGATACCTTCTTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCACTTGGTTCTA 32103 Query 38269 CTTCTAATGTAATAGTTTTACC 38290 |||||| || |||||||| || Sbjct 32104 CTTCTAGGGTGATAGTTTTGCC 32125 >seq32150 Length=31130 Score = 102 bits (112), Expect = 5e-17 Identities = 81/96 (84%), Gaps = 6/96 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||| |||||| |||| |||||||||| | ||||||||||||| | || |||||||| Sbjct 7206 AAGTCCGTTCGCTTGACTGTGGTTTCACAAGATAGTAGATAGGAACAGTGGGAATCTCGT 7265 Query 25957 TAATCCTTTCATGCGCGTCACTAA-TTAGATGACGA 25991 |||||| ||||||||||||| ||| ||||||||||| Sbjct 7266 TAATCCATTCATGCGCGTCAGTAATTTAGATGACGA 7301 >seq1554 Length=107351 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| || | ||| ||||| ||| || || || ||||| || | Sbjct 10301 TACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTG 10242 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | ||| ||||| ||||| || || ||||| ||||| | || Sbjct 10241 ACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGG 10182 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||||| || ||| || ||||| | | ||| || | ||||| Sbjct 10181 GGATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAA 10122 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || || || || | ||| || ||||| || ||||| Sbjct 10121 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 10073 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| || | |||||||||| ||| || || || ||||| || | Sbjct 9323 TACCACCACGAAGACGCAAGACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 9264 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | ||| ||||| || || || || || || ||||| | || Sbjct 9263 ACAATGTACGGCCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGG 9204 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| || || ||| ||||||| | || || | ||| | Sbjct 9203 GGATACCTTCTTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCACTTGGTTCTA 9144 Query 38269 CTTCTAATGTAATAGTTTTACC 38290 |||||| || |||||||| || Sbjct 9143 CTTCTAGGGTGATAGTTTTGCC 9122 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| || | ||| |||||| ||| || || || ||||| || | Sbjct 10950 TACCACCACGGAGACGCAAGACGAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTG 10891 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | ||| ||||| || || || || ||||| ||||| | || Sbjct 10890 ACAATGTACGGCCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGG 10831 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||||| || || ||| ||||||| | ||||| | ||| | Sbjct 10830 GGATGCCTTCTTTGTCTTGGATCTTAGCCTTGACATTCTCAATGGTATCACTTGGTTCTA 10771 Query 38269 CTTCTAATGTAATAGTTTTACC 38290 | || | || |||||||| || Sbjct 10770 CCTCAAGGGTGATAGTTTTGCC 10749 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| || | ||| |||||| ||| || ||||| ||||| || | Sbjct 10073 TACCACCACGGAGACGCAAGACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCTG 10014 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | ||| ||||| || || || || ||||| ||||| | || Sbjct 10013 ACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGGG 9954 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||||| || || ||| ||||||| | || || | ||| | Sbjct 9953 GGATGCCTTCTTTGTCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTTGGTTCTA 9894 Query 38269 CTTCTAATGTAATAGTTTTACC 38290 | || | || |||||||| || Sbjct 9893 CCTCAAGGGTGATAGTTTTGCC 9872 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| || | ||| || || ||||||||||| ||||| || | Sbjct 18052 TACCACCACGGAGACGCAAGACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGG 17993 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | ||||||||| || || || || ||||| ||||| | || Sbjct 17992 ACAATGTGCGGCCATCTTCAAGTTGTTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGG 17933 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| ||||| ||||| ||| ||||||| | || || | ||| | Sbjct 17932 GAATGCCTTCCTTGTCTTGGATTTTGGTCTTTACATTCTCAATTGTGTCGCTTGGTTCTA 17873 Query 38269 CTTCTAATGTAATAGTTTTACC 38290 | || | || || |||||||| Sbjct 17872 CCTCAAGGGTTATGGTTTTACC 17851 >seq25551 Length=29834 Score = 100 bits (110), Expect = 2e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 6882 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCATGGTACTTGTGAACTATCGGTCTCGT 6941 Query 20007 GGT-AATATTTAGCCTT 20022 | | | ||||||||||| Sbjct 6942 GCTGAGTATTTAGCCTT 6958 >seq29514 Length=25277 Score = 98.7 bits (108), Expect = 7e-16 Identities = 80/98 (82%), Gaps = 8/98 (8%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG--------GGTAATCT 25953 |||||||| | ||||||| |||||||| |||||||| |||||| || ||||| Sbjct 6377 AAGCCCGTCCTCTTGGCTATGGTTTCGGTAGATAGTTTATAGGGACAACAATGGGAATCT 6436 Query 25954 CGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||||| ||||| ||||||||||||||||||||| Sbjct 6437 CGTTAATCCAGTCATGGGCGTCACTAATTAGATGACGA 6474 Score = 98.7 bits (108), Expect = 7e-16 Identities = 80/98 (82%), Gaps = 8/98 (8%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG--------GGTAATCT 25953 |||||||| | ||||||| |||||||| |||||||| |||||| || ||||| Sbjct 7394 AAGCCCGTCCTCTTGGCTATGGTTTCGGTAGATAGTTTATAGGGACAACAATGGGAATCT 7453 Query 25954 CGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||||| ||||| ||||||||||||||||||||| Sbjct 7454 CGTTAATCCAGTCATGGGCGTCACTAATTAGATGACGA 7491 >seq75604 Length=64718 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 5/76 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||||||||||||| ||||||||||||||||| || |||||||| Sbjct 30389 AAGCCAGTTCCCTTGGCTGTGGTTTCACTAGATAGTAGATAGGGACAGTGGGAATCTCGT 30448 Query 25957 TAATCCTTTCATGCGC 25972 |||||| ||||||||| Sbjct 30449 TAATCCATTCATGCGC 30464 >seq64223 Length=213998 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||| || || ||||||||||||||| ||||||||||||||| ||||||||| Sbjct 40662 AAGTCCATTTGCTTGGCTGTGGTTTCATTAGATAGTAGATAGGAACAGTAGTAATCTCGG 40603 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||| |||||||||||| Sbjct 40602 TAATCCATTCATGCGCGTCACACATTAGATGACGA 40568 >seq18034 Length=40268 Score = 82.4 bits (90), Expect = 5e-11 Identities = 59/68 (87%), Gaps = 5/68 (7%) Strand=Plus/Minus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962 ||||||||| ||||||||||||||||| |||||||||| || |||||||||||||| Sbjct 23140 GTTCCCTTGACTGTGGTTTCGCTAGATTGTAGATAGGGACAGTGGGAATCTCGTTAATCC 23081 Query 25963 TTTCATGC 25970 ||||||| Sbjct 23080 ATTCATGC 23073 >seq4257 Length=34656 Score = 82.4 bits (90), Expect = 5e-11 Identities = 57/65 (88%), Gaps = 5/65 (8%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||||||||||||||||||| |||||||||||||||||||| | || |||||||| Sbjct 2804 AAGCCCGTTCCCTTGGCTGTGTTTTCGCTAGATAGTAGATAGGAACAGTGGGAATCTCGT 2863 Query 25957 TAATC 25961 ||||| Sbjct 2864 TAATC 2868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334638196135376