Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1757 104 2e-17 seq1554 104 2e-17 >seq1757 Length=74305 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || ||||| || | || ||||| ||||||||| | || ||||| || Sbjct 30432 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGT 30373 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | |||||| ||| || |||||||||||| | ||| ||||| Sbjct 30372 GACACTATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 30313 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | ||||| | ||| || || ||| | |||||| || || | || || || Sbjct 30312 CAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAAC 30253 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| ||||| || ||| | || |||||||| || ||||| Sbjct 30252 ATCCAGAAAGAGTCTACTCTCCATCTTGTCTTGCGTCTCCGTGGTGG 30206 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 111180 TTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGA 111239 ||| |||||||| || ||||||||||| | || |||||||| || ||| | || ||| Sbjct 33231 TTTCAAAATGCAGATCTTTGTCAAAACACTAACTGGCAAAACTATCACCCTTGAGGTGGA 33172 Query 111240 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111299 ||| || || | | | | || ||| || || ||||| || ||| ||||| Sbjct 33171 ACCAAGTGACACAATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCC 33112 Query 111300 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111359 ||||| ||| | ||||| | ||| || || ||| | |||||| || || | || Sbjct 33111 AGATCAGCAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGA 33052 Query 111360 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || ||||| ||||| ||| | || ||||||| || ||||| Sbjct 33051 CTACAACATCCAGAAGGAATCCACACTCCATCTCGTCCTGCGTCTCCGTGGTGG 32998 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 111214 GGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAA 111273 || |||||||||||| | || |||||| || || | ||| | || ||| || Sbjct 26645 GGTAAAACCATTACCCTTGAGGTGGAACCAAGTGACACCATTGAGAATGTGAAAGCCAAG 26586 Query 111274 ATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAA 111333 || ||||| || ||| ||||| ||||| ||| | ||||| | ||| || || ||| Sbjct 26585 ATCCAAGACAAGGAGGGCATTCCCCCAGATCAGCAACGTCTTATCTTTGCTGGAAAGCAA 26526 Query 111334 TTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTA 111393 | |||||| || || |||| || || || || || ||||| ||||| ||| | Sbjct 26525 CTTGAAGATGGCCGTACATTGTCCGACTACAACATCCAGAAGGAATCCACACTTCATCTT 26466 Query 111394 GTGTTGCGTCTGCGCGGTGG 111413 ||||||||||| || ||||| Sbjct 26465 GTGTTGCGTCTCCGTGGTGG 26446 >seq1554 Length=107351 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || ||||| || | || ||||| ||||||||| | || ||||| || Sbjct 10073 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGT 10132 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | |||||| ||| || |||||||||||| | ||| ||||| Sbjct 10133 GACACTATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 10192 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | ||||| | ||| || || ||| | |||||| || || | || || || Sbjct 10193 CAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAAC 10252 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| ||||| || ||| | || |||||||| || ||||| Sbjct 10253 ATCCAGAAAGAGTCTACTCTCCATCTTGTCTTGCGTCTCCGTGGTGG 10299 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 111180 TTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGA 111239 ||| |||||||| || ||||||||||| | || |||||||| || ||| | || ||| Sbjct 8011 TTTCAAAATGCAGATCTTTGTCAAAACACTAACTGGCAAAACTATCACCCTTGAGGTGGA 8070 Query 111240 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111299 ||| || || | ||| | || ||| || || ||||| || ||| ||||| Sbjct 8071 ACCAAGTGACACAATTGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCC 8130 Query 111300 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111359 ||||| ||| | ||||| | ||| || || ||| | |||||| || || | || Sbjct 8131 AGATCAGCAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCGGA 8190 Query 111360 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || ||||| ||||| ||| | || ||||||| || ||||| Sbjct 8191 CTACAACATCCAGAAGGAATCCACACTCCATCTCGTCCTGCGTCTCCGTGGTGG 8244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422649726563200