Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq70036 123 5e-23 seq72101 122 2e-22 >seq70036 Length=130556 Score = 123 bits (136), Expect = 5e-23 Identities = 166/227 (73%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || ||||| ||||| |||| ||||||| || ||||| |||||| Sbjct 52983 CTCTTCAATGCAATTGAGACTATGCCACCAGTCAAACAGAAGGCAGATTGGGCACTCAAC 53042 Query 42669 TGGATCGAGAGTCCCGAC---GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 |||||| | ||||| || ||||| || || | |||| || || |||| ||| Sbjct 53043 TGGATC---AACGCCGACAATGCCACGTTTGGTGAACGAGTGGTTGCTTTCGCCGCTGTC 53099 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTC 42784 ||||||||||| |||||||| |||| || | ||||||||| | ||| ||| |||||| Sbjct 53100 GAGGGCATCTTTTTCTCGGGTTCCTTTGCTGCTATCTTCTGGTTGAAGAAGAGGGGTGTC 53159 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||||| || | || ||||| || || | |||||||| || |||| Sbjct 53160 -ATGCCAGGTTTAACTTTCTCCAATGAGTTGATCAGCAGAGATGAGG 53205 >seq72101 Length=85746 Score = 122 bits (134), Expect = 2e-22 Identities = 163/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || ||||| ||||| |||| ||||||| || ||||| |||||| Sbjct 42325 CTCTTCAATGCAATTGAGACTATGCCACCAGTCAAACAGAAGGCAGATTGGGCACTCAAC 42266 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||||| | | | | || ||||| || || | |||| || || |||| |||||| Sbjct 42265 TGGATCAATGCTGACAATGCCACGTTTGGTGAACGAGTGGTTGCTTTCGCCGCTGTCGAG 42206 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGAT 42787 |||||||| ||||| || |||| || | ||||||||| | ||| ||| |||||| || Sbjct 42205 GGCATCTTTTTCTCAGGTTCCTTTGCTGCTATCTTCTGGTTGAAGAAGAGGGGTGTC-AT 42147 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||| || | || ||||| || || | |||||||| || |||| Sbjct 42146 GCCAGGTTTAACTTTCTCCAATGAGTTGATCAGCAGAGATGAGG 42103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943445666248960