Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1554 138 3e-27 seq1757 127 5e-24 >seq1554 Length=107351 Score = 138 bits (152), Expect = 3e-27 Identities = 171/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | | || ||||| | || ||| |||||||| || || || Sbjct 13426 TGACCACCACGTAGACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCT 13367 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || ||||| || ||||| | ||| ||||| |||||||||| ||| || ||| ||| Sbjct 13366 GAAAGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGA---TCT 13310 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || ||||||||||| ||||| || ||||| || ||||| |||| || || | | Sbjct 13309 GGGGGGATGCCTTCTTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTGTCACTTGGT 13250 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||| || || || ||||||||||| || ||||| Sbjct 13249 TCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 13197 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | || ||||| | || ||||| ||||| || ||||| | Sbjct 10299 CCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGAC 10240 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | ||| ||||| || ||||| ||||| || ||| |||||| Sbjct 10239 AATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGA---TCTGGG 10183 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || ||||| || ||||| || ||||| |||| || || | ||| Sbjct 10182 GGGATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCA 10123 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || ||||||||||| || ||||| Sbjct 10122 ACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 10073 >seq1757 Length=74305 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | || ||||| | || ||||| ||||| || ||||| | Sbjct 30206 CCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGAC 30265 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | ||| ||||| || ||||| ||||| || ||| |||||| Sbjct 30266 AATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGA---TCTGGG 30322 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || ||||| || ||||| || ||||| |||| || || | ||| Sbjct 30323 GGGATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCA 30382 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || ||||||||||| || ||||| Sbjct 30383 ACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 30432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178510306281888