Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2599 91.5 2e-13 seq29058 89.7 6e-13 seq20558 89.7 6e-13 seq20014 89.7 6e-13 seq1554 87.8 2e-12 seq75343 86.0 7e-12 seq43034 86.0 7e-12 >seq2599 Length=53517 Score = 91.5 bits (100), Expect = 2e-13 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 56998 AAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| ||| | |||| | ||| |||||| ||||||||||||||||||||| ||| Sbjct 46913 AAAAATTCCTCTTCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGAATA 46972 Query 57057 CTCACCACTATACTACCGAGGATTG 57081 ||||||||||||||||||| |||| Sbjct 46973 ATCACCACTATACTACCGAGAATTG 46997 >seq29058 Length=145958 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4304 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4245 Query 57067 TACTACCGAGGATT 57080 ||||| |||||||| Sbjct 4244 TACTATCGAGGATT 4231 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4923 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4864 Query 57067 TACTACCGAGGATT 57080 ||||| |||||||| Sbjct 4863 TACTATCGAGGATT 4850 >seq20558 Length=174578 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 114284 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 114225 Query 57067 TACTACCGAGGATT 57080 ||||| |||||||| Sbjct 114224 TACTATCGAGGATT 114211 >seq20014 Length=147264 Score = 89.7 bits (98), Expect = 6e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 140081 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 140140 Query 57067 TACTACCGAGGATTGAATA 57085 ||||| |||||||| |||| Sbjct 140141 TACTATCGAGGATT-AATA 140158 >seq1554 Length=107351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032 |||||| |||| || | || |||||| || | ||| | || |||||||| || ||| Sbjct 13432 ATTTATTGACCACCACGTAGACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTG 13373 Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092 ||||| | || || || | || || || ||||| |||||||| || | || ||||| Sbjct 13372 TAATCTGAAAGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGA 13313 Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTC 42152 || | || | || || || || ||| || ||| | | | | ||||| || Sbjct 13312 TCTGGGGGGATGCCTTCTTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTGTCACTT 13253 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||| || || | || ||||| ||||| || || ||||| || ||||||||||| Sbjct 13252 GGTTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 13197 >seq75343 Length=74933 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 ||| |||||| ||||||||||||||||||||| |||||||||||||||||| | ||||| Sbjct 66824 AATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCTAGGAT 66765 Query 57080 TG 57081 || Sbjct 66764 TG 66763 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 ||| |||||| ||||||||||||||||||||| |||||||||||||||||| | ||||| Sbjct 67429 AATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCTAGGAT 67370 Query 57080 TG 57081 || Sbjct 67369 TG 67368 >seq43034 Length=15484 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 ||| |||||| ||||||||||||||||||||| |||||||||||||||||| | ||||| Sbjct 14239 AATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCTAGGAT 14180 Query 57080 TG 57081 || Sbjct 14179 TG 14178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542698812048640