Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1554 107 2e-18 seq1757 95.1 1e-14 >seq1554 Length=107351 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || ||||| ||||| ||||||||||||| | |||||| | |||||| Sbjct 13405 ACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCTGAAAGGGTGCGACCATCTTCA 13346 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || ||||| || || | || | || ||||| || || || || |||||||| ||||| Sbjct 13345 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGGATGCCTTCTTTATCTTGG 13286 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || |||||| || | || |||| | || || || | || | ||||||| Sbjct 13285 ATCTTAGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATGGTCTTG 13226 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || || ||||| |||||||| Sbjct 13225 CCAGTGAGGGTCTTGACGAAGATTTGCAT 13197 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || ||||| |||||||||||||| || | | ||||| | |||||| Sbjct 18032 ACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGACAATGTGCGGCCATCTTCA 17973 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || || || || | || || || ||||| || || ||||| ||||| || ||||| Sbjct 17972 AGTTGTTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGG 17913 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||||||| ||| | ||| || | | || || || | |||| ||| || Sbjct 17912 ATTTTGGTCTTTACATTCTCAATTGTGTCGCTTGGTTCTACCTCAAGGGTTATGGTTTTA 17853 Query 64415 CC 64416 || Sbjct 17852 CC 17851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || ||||| ||||||||||| |||| | ||||| | |||||| Sbjct 10053 ACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCTGACAATGTGCGGCCATCTTCA 9994 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || ||||| || || | ||||| || ||||| || || || || |||||||| ||||| Sbjct 9993 AGTTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGG 9934 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCAC 64385 || || ||| ||| ||| | || |||| Sbjct 9933 ATCTTAGCCTTGACATTCTCAATGGTGTCAC 9903 >seq1757 Length=74305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || ||||| ||||| ||||||||||||| | |||||| | |||||| Sbjct 23168 ACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCTGAAAGGGTGCGACCATCTTCA 23227 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || ||||| || || | || || || ||||| || || ||||| ||||| || ||||| Sbjct 23228 AGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGG 23287 Query 64355 ATTTTTTGCTTT 64366 | | |||||||| Sbjct 23288 A-TCTTTGCTTT 23298 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || ||||| || |||||||| |||| | ||||| | |||||| Sbjct 29565 ACGAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCCATCTTCA 29624 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 |||||||| || || | || || || ||||| || || || || |||||||| ||||| Sbjct 29625 AGCTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATACCTTCTTTGTCTTGG 29684 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCAC 64385 || || ||| ||| ||| | || |||| Sbjct 29685 ATCTTAGCCTTGACATTCTCAATGGTGTCAC 29715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499172036090240