Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1757 120 2e-22 seq1554 105 5e-18 >seq1757 Length=74305 Score = 120 bits (132), Expect = 2e-22 Identities = 150/204 (74%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || | ||| || ||||| || ||||| |||||||| ||| | Sbjct 25178 CCACCACGCAGACGCAAGACAAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCG--G 25235 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| | |||||| |||||| | |||||||| || || || | Sbjct 25236 ACAATGTACGGCCATCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGG 25295 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| |||||| | |||||| | || || |||||||| ||||| Sbjct 25296 GAATGCCTTCCTTGTCTTGGATTTTGGTCTTTACATTCTCAATTGTATCGCTTGGTTCTA 25355 Query 15128 CGTCTAAGGTAATGGTTTTACCTG 15151 | || | ||| || |||||||||| Sbjct 25356 CCTCAAGGGTGATAGTTTTACCTG 25379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | || || | ||| || || || || ||||| ||||||||||| Sbjct 23150 CCACCACGTAAACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCTGAA 23209 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | ||| || |||||| | || | ||| || || || ||| Sbjct 23210 AGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGA 23269 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| || ||||| ||||||| |||| ||||| || || ||| || Sbjct 23270 ATGCCTTCCTTGTCTTGGATCTTTGC-TTTTACATTTTCAATAGTGTCACTTGGTTCAAC 23328 Query 15129 GTCTAAGGTAATGGT 15143 || | ||||||||| Sbjct 23329 CTCAAGGGTAATGGT 23343 >seq1554 Length=107351 Score = 105 bits (116), Expect = 5e-18 Identities = 138/189 (73%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || | ||| ||||| || || ||||| |||||||| ||| || ||| || | | Sbjct 18035 AAGACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCG--GACAATGTGCGGCCAT 17978 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| | |||||| |||||| | || | ||| || || || ||||| |||||||||| Sbjct 17977 CTTCAAGTTGTTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGT 17918 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | |||||| | |||||| | || || || ||||| |||||| || | ||| |||| Sbjct 17917 CTTGGATTTTGGTCTTTACATTCTCAATTGTGTCGCTTGGTTCTACCTCAAGGGTTATGG 17858 Query 15143 TTTTACCTG 15151 ||||||||| Sbjct 17857 TTTTACCTG 17849 Score = 102 bits (112), Expect = 6e-17 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || | ||| |||||||| || ||||| |||||||| || || Sbjct 13195 CCACCACGAAGACGTAATACAAGATGGAGGGTAGATTCCTTTTGAATGTTGTAGTC--TG 13138 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| | ||| || |||||| | |||||||| || || || | Sbjct 13137 ACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGG 13078 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| ||| ||| | || || || || || ||| | Sbjct 13077 GGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTTGGTTCAA 13018 Query 15128 CGTCTAAGGTAATGGTTTTACCTG 15151 | || | ||||||||||||||||| Sbjct 13017 CCTCCAGGGTAATGGTTTTACCTG 12994 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | ||| || || || || ||||| ||||||||||| || | | | ||| Sbjct 13408 AAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCTGAAAGGGTGCGACCATCT 13349 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| || |||||| | |||||||| || || || || || ||||| || || Sbjct 13348 TCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGGATGCCTTCTTTATCT 13289 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || || ||||||| |||| ||||| || || ||| || || | ||||||||| Sbjct 13288 TGGATCTTAGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATGGTC 13229 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || || || ||||||||| Sbjct 13228 TTGCCAGTGAGGGTCTTGACGAAGATTTGCATA 13196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357062289797360