Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1554 114 1e-20 seq39745 91.5 1e-13 seq8201 91.5 1e-13 seq1757 87.8 2e-12 >seq1554 Length=107351 Score = 114 bits (126), Expect = 1e-20 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 45108 TTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTAT 45165 |||||| || || || || | ||| || ||||| || ||||||||||||||||| || | Sbjct 13431 TTTATTGACCACCACGTAGACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGT 13372 Query 45166 AATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGT 45225 |||| | ||| | ||| || | ||| ||||| ||| | ||||| |||||||| | Sbjct 13371 AATCTGAAAGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGAT 13312 Query 45226 CCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAG 45285 | || || ||||||||||||||||| || || ||| | ||| | ||||| | Sbjct 13311 CTGGGGGGATGCCTTCTTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTGTCACTTG 13252 Query 45286 ACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || |||| || ||||| || || || || || || |||||||| Sbjct 13251 GTTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 13197 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || ||||| || |||||||||||||| || || || ||| Sbjct 18053 ATACCACCACGGAGACGCAAGACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCG 17994 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| || | ||||||||| ||| | || | |||||||| || | Sbjct 17993 --GACAATGTGCGGCCATCTTCAAGTTGTTTTCCAGCGAAGATAAGACGTTGCTGATCTG 17936 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTT 45256 | ||||||||||| || ||||| ||||| Sbjct 17935 GGGGAATGCCTTCCTTGTCTTGGATTTT 17908 >seq39745 Length=16847 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || || ||| | ||||| || || || | || |||||||| |||||||| ||||| Sbjct 5869 ATCATTGAAGCCCAAGTAGAGACAGGGAACCCTTACATGCTGTACAAAGATCATTGCAAT 5928 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 ||||| | ||||| ||| ||||||| || |||||||||||||||||| | ||||| Sbjct 5929 AGGAAGAGTAATCAACAGAACCTGGGAACCATCAAATGTAGTAATCTTTGCACTGAAATA 5988 Query 123708 ATCGAATACA 123717 | ||||||| Sbjct 5989 GTAGAATACA 5998 >seq8201 Length=93372 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || || ||| | ||||| || || || | || |||||||| |||||||| ||||| Sbjct 62883 ATCATTGAAGCCCAAGTAGAGACGGGGAACCCTTACATGCTGTACAAAGATCATTGCAAT 62824 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 ||||| | ||||| ||| ||||||| || |||||||||||||||||| | ||||| Sbjct 62823 AGGAAGAGTAATCAACAGAACCTGGGAACCATCAAATGTAGTAATCTTTGCACTGAAATA 62764 Query 123708 ATCGAATACA 123717 | ||||||| Sbjct 62763 GTAGAATACA 62754 >seq1757 Length=74305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 45108 TTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTAT 45165 |||||| || || || | | ||| || ||||| || ||||||||||||||||| || | Sbjct 23142 TTTATTGACCACCACGTAAACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGT 23201 Query 45166 AATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGT 45225 |||| | ||| | ||| || | ||| ||||| ||| | || | |||||||| | Sbjct 23202 AATCTGAAAGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGAT 23261 Query 45226 CCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 | || ||||||||||| || ||||| || ||| Sbjct 23262 CTGGGGGAATGCCTTCCTTGTCTTGGATCTTT 23293 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || ||||| || || || |||||||| || || || ||| Sbjct 25175 ATACCACCACGCAGACGCAAGACAAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCG 25234 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| || | ||||||||| ||| | ||||| |||||||| || | Sbjct 25235 --GACAATGTACGGCCATCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTG 25292 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTT 45256 | ||||||||||| || ||||| ||||| Sbjct 25293 GGGGAATGCCTTCCTTGTCTTGGATTTT 25320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451575514572160