Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq75505 122 2e-22 seq17158 122 2e-22 seq1757 116 9e-21 seq1554 116 9e-21 >seq75505 Length=81545 Score = 122 bits (134), Expect = 2e-22 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||||||| ||||| |||||||| || ||||| |||| ||||||||||| ||| || Sbjct 77896 CGAAGTCTCAGTACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTT 77955 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| ||| || ||||| ||||| || | ||||||||| ||| ||| ||| Sbjct 77956 CGTCCATCTTCCAACTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCT 78015 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| ||||| || ||||||||||||||| | || ||| | || |||||| ||||| Sbjct 77990 CTGATCTTTGCCGGCAAACAGTTGGAAGATGGACGAACCTTGTCTGACTACAACATCCAG 77931 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || || ||||| || ||||| |||||||||| Sbjct 77930 AAGGAATCCACTCTCCATCTTGTACTGAGACTTCG 77896 >seq17158 Length=148548 Score = 122 bits (134), Expect = 2e-22 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||||||| ||||| |||||||| || ||||| |||| ||||||||||| ||| || Sbjct 118871 CGAAGTCTCAGTACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTT 118930 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| ||| || ||||| ||||| || | ||||||||| ||| ||| ||| Sbjct 118931 CGTCCATCTTCCAACTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCT 118990 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| ||||| || ||||||||||||||| | || ||| | || |||||| ||||| Sbjct 118965 CTGATCTTTGCCGGCAAACAGTTGGAAGATGGACGAACCTTGTCTGACTACAACATCCAG 118906 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || || ||||| || ||||| |||||||||| Sbjct 118905 AAGGAATCCACTCTCCATCTTGTACTGAGACTTCG 118871 >seq1757 Length=74305 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| || |||||||| ||||| || |||| ||||||||| | ||| || Sbjct 29553 CGGAGACGCAAGACGAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGACAATGTG 29612 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||||||||| |||||||| ||||| ||||| || || || ||| Sbjct 29613 CGGCCATCTTCAAGCTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATACCT 29672 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| ||| || || | |||||| ||| |||||| || | Sbjct 29673 TCTTTGTCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTTGGTTCTACCTCAAGG 29732 Query 199589 GTGATCGTCTTACC 199602 ||||| || || || Sbjct 29733 GTGATAGTTTTGCC 29746 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||| || ||||| ||||| || |||| ||||||||| | ||| || Sbjct 31932 CGAAGACGCAAGACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAATGTT 31991 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || |||||||| |||||||| ||||||||||| || || || ||| Sbjct 31992 CGGCCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGGATACCT 32051 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| ||| || || | ||||| ||| |||||| || | Sbjct 32052 TCTTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCACTTGGTTCTACTTCTAGG 32111 Query 199589 GTGATCGTCTTACC 199602 ||||| || || || Sbjct 32112 GTGATAGTTTTGCC 32125 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || |||||| |||||||| ||||||||||| | ||||||||| | ||| || Sbjct 25184 CGCAGACGCAAGACAAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTA 25243 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || ||||| |||||||| | ||| ||||| || || ||| ||| Sbjct 25244 CGGCCATCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCT 25303 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||| || || | || || ||| |||||| || | Sbjct 25304 TCCTTGTCTTGGATTTTGGTCTTTACATTCTCAATTGTATCGCTTGGTTCTACCTCAAGG 25363 Query 199589 GTGATCGTCTTACC 199602 ||||| || ||||| Sbjct 25364 GTGATAGTTTTACC 25377 Score = 100 bits (110), Expect = 7e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| |||||||| | |||||||| | || ||| |||| |||||| ||||| Sbjct 32026 CTTATCTTCGCTGGAAAGCAACTTGAAGATGGCCGAACATTGTCCGACTACAACATCCAG 31967 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||| |||||||| ||||| ||| | ||||| Sbjct 31966 AAAGAGTCCACTCTTCATCTTGTCTTGCGTCTTCG 31932 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| ||||||||| | |||||||| | || ||| | || |||||| ||||| Sbjct 29647 CTTATCTTCGCTGGAAAGCAGCTTGAAGATGGCCGCACATTGTCAGACTACAACATCCAG 29588 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||| ||||| || || || ||| | || || Sbjct 29587 AAAGAGTCCACTCTCCATCTCGTCTTGCGTCTCCG 29553 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||| || |||||||| | |||||||| | || ||| | || |||||| ||||| Sbjct 30306 CTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAACATCCAG 30247 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||||||||| || ||||| ||| | || || Sbjct 30246 AAAGAGTCTACTCTCCATCTTGTCTTGCGTCTCCG 30212 >seq1554 Length=107351 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||| || ||||| ||||| || |||| ||||||||| | ||| || Sbjct 9315 CGAAGACGCAAGACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAATGTA 9256 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || |||||||| |||||||| ||||||||||| || || || ||| Sbjct 9255 CGGCCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGGATACCT 9196 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| ||| || || | ||||| ||| |||||| || | Sbjct 9195 TCTTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCACTTGGTTCTACTTCTAGG 9136 Query 199589 GTGATCGTCTTACC 199602 ||||| || || || Sbjct 9135 GTGATAGTTTTGCC 9122 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || |||||| |||||||| ||||| || || | ||||||||| | ||| || Sbjct 10065 CGGAGACGCAAGACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCTGACAATGTG 10006 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || |||||||| |||||||||||||| ||||| || || || ||| Sbjct 10005 CGGCCATCTTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCT 9946 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| ||| || || | |||||| ||| |||||| || | Sbjct 9945 TCTTTGTCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTTGGTTCTACCTCAAGG 9886 Query 199589 GTGATCGTCTTACC 199602 ||||| || || || Sbjct 9885 GTGATAGTTTTGCC 9872 Score = 100 bits (110), Expect = 7e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| |||||||| | |||||||| | || ||| |||| |||||| ||||| Sbjct 9221 CTTATCTTCGCTGGAAAGCAACTTGAAGATGGCCGTACATTGTCCGACTACAACATCCAG 9280 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||| |||||||| ||||| ||| | ||||| Sbjct 9281 AAAGAGTCCACTCTTCATCTTGTCTTGCGTCTTCG 9315 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||| || |||||||| | |||||||| | || ||| | || |||||| ||||| Sbjct 10199 CTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAACATCCAG 10258 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||||||||| || ||||| ||| | || || Sbjct 10259 AAAGAGTCTACTCTCCATCTTGTCTTGCGTCTCCG 10293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177778216991632