Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1554 95.1 8e-15 seq1757 91.5 1e-13 >seq1554 Length=107351 Score = 95.1 bits (104), Expect = 8e-15 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 34784 TGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCC 34843 |||| ||| ||||| ||||| |||||||| | | || |||| || || || ||||| Sbjct 8215 TGTGGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGGCCATCTTCAAGTTGCTTTCC 8156 Query 34844 GGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTT 34903 ||||| || || |||||||| ||| | || | ||||||||||| ||||| ||| Sbjct 8155 AGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCTTT 8096 Query 34904 GACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 || || || || | |||| | || || || | ||| || ||||| || || || Sbjct 8095 CAC--ATTCTCAATTGTGTCACTTGGTTCCACCTCAAGGGTGATAGTTTTGCCAGTTAGT 8038 Query 34962 GTCTTCACAAAGATCTGCATATT 34984 || || |||||||||||||| || Sbjct 8037 GTTTTGACAAAGATCTGCATTTT 8015 >seq1757 Length=74305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 34784 TGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCC 34843 |||| ||| ||||| ||||| ||||| || | | || |||| || || || ||||| Sbjct 33027 TGTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTGCGGCCATCTTCAAGTTGCTTTCC 33086 Query 34844 GGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTT 34903 ||||| || || |||||||| ||| | || | ||||||||||| ||||| ||| Sbjct 33087 AGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCTTT 33146 Query 34904 GACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 || || || || | |||| | || || || | ||| || ||||| || || || Sbjct 33147 CAC--ATTCTCGATTGTGTCACTTGGTTCCACCTCAAGGGTGATAGTTTTGCCAGTTAGT 33204 Query 34962 GTCTTCACAAAGATCTGCATATT 34984 || || |||||||||||||| || Sbjct 33205 GTTTTGACAAAGATCTGCATTTT 33227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324334110895488