Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq72101 141 1e-28 seq70036 132 5e-26 seq12127 87.8 2e-12 >seq72101 Length=85746 Score = 141 bits (156), Expect = 1e-28 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || ||||| ||||| || || |||||||| ||||| | || || || | Sbjct 42103 CCTCATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCTTCT 42162 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | |||||||| |||| |||||| || || || || || || || || || || || |||| Sbjct 42163 TCAACCAGAAGATAGCAGCAAAGGAACCTGAGAAAAAGATGCCCTCGACAGCGGCGAAAG 42222 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||| | || ||| ||| | | |||| | | || ||||| || ||||||||||| | Sbjct 42223 CAACCACTCGTTCACCAAACGTGGCATTGTCAGCATTGATCCAGTTGAGTGCCCAATCTG 42282 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 |||||| ||| || |||||| ||||| || | ||| || || || Sbjct 42283 CCTTCTGTTTGACTGGTGGCATAGTCTCAATTGCATTGAAGAGGTA 42328 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 19234 TATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAAT 19293 |||| || || | ||| |||||||||||||| || || ||||| || || ||||| || Sbjct 43117 TATGTGTCAATGAGTAAGCTGTACATTTCTGAGTGGATGTTTTCCATGGCAATCTGGAAC 43176 Query 19294 CCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACC 19347 || || || || ||||||||||| |||| ||||| | ||||||||| ||| Sbjct 43177 CCATAGAAGCACCTTGCTTCTGTGCTCTGCACTTCTTGGCTAAATCTTTCAACC 43230 >seq70036 Length=130556 Score = 132 bits (146), Expect = 5e-26 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || ||||| ||||| || || |||||||| ||||| | || || || | Sbjct 53205 CCTCATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCTTCT 53146 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | |||||||| |||| |||||| || || || || || || || || || || || |||| Sbjct 53145 TCAACCAGAAGATAGCAGCAAAGGAACCCGAGAAAAAGATGCCCTCGACAGCGGCGAAAG 53086 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||| | || ||| ||| | | |||| | | ||||| || ||||||||||| | Sbjct 53085 CAACCACTCGTTCACCAAACGTGGCATTGTCGGCGTTGATCCAGTTGAGTGCCCAATCTG 53026 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 |||||| ||| || |||||| ||||| || | ||| || || || Sbjct 53025 CCTTCTGTTTGACTGGTGGCATAGTCTCAATTGCATTGAAGAGGTA 52980 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 19234 TATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAAT 19293 |||| || |||| ||| |||||||||||||| || || ||||| || || ||||| ||| Sbjct 52274 TATGTGTCAATCAGTAAGCTGTACATTTCTGAGTGGATGTTTTCCATTGCAATCTGGAAT 52215 Query 19294 CCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACC 19347 || || || || ||||||||||| |||| || || | ||||||||| ||| Sbjct 52214 CCATAGAAGCACCTTGCTTCTGTGCTCTGCACCTCTTGGCTAAATCTTTCAACC 52161 >seq12127 Length=21504 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/220 (70%), Gaps = 12/220 (5%) Strand=Plus/Minus Query 19304 ATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTA 19363 ||| | |||| || |||| || || ||||||||||||||| |||| |||||||| | Sbjct 18686 ATCATCCTTCCGTGCTCTGCACCTCGTGACAAAATCTTTCGACTAAATCCTCATTAACGA 18627 Query 19364 TTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGG 19423 | || |||| |||||||||| ||||| || || ||||| ||| ||||| || Sbjct 18626 TACCGCCACTTGCTGCAAAAACAGCTAAAACGTGCGAGATAAACCTTTTCTCATC-GATA 18568 Query 19424 TTAA---TGTATTCCAATCATTAA--TATCTTTAGATAAATCTACTTCTTCAACTGTCCA 19478 || | | | ||||| || || | ||| || ||||||||||| || || ||| | Sbjct 18567 TTCAGCTTTTCGTCCAA--ATGAACCGCTGTTTGGACAAATCTACTTCATCCACGGTCAA 18510 Query 19479 AAAAGAAGCCTCTGC----TTTTTTATACATGTTCCATAT 19514 || || || || || |||||||| ||| ||||| || Sbjct 18509 GAATGAGGCTTCGGCTTTTTTTTTTATTCATCTTCCAAAT 18470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561576932653440