Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq72101 98.7 1e-15 seq70036 89.7 6e-13 seq37837 84.2 3e-11 seq21453 82.4 9e-11 >seq72101 Length=85746 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 37195 AACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCttt 37254 ||||| ||||||| || ||||| ||||| || || ||||| |||||||| | ||| || | Sbjct 42101 AACCT-CATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCT 42159 Query 37255 ttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAA 37314 | || | ||| || || || ||||| || || || || || || || || || || || | Sbjct 42160 TCTTCAACCAGAAGATAGCAGCAAAGGAACCTGAGAAAAAGATGCCCTCGACAGCGGCGA 42219 Query 37315 ATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAAT 37374 | || || | ||| ||| || || | | | | | || ||||| || || ||||| Sbjct 42220 AAGCAACCACTCGTTCACCAAACGTGGCATTGTCAGCATTGATCCAGTTGAGTGCCCAAT 42279 Query 37375 CTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAG 37420 ||||||| ||| || | || || |||||||| || ||||| Sbjct 42280 CTGCCTTCTGTTTGACTGGTGGCATAGTCTCAATTGCATTGAAGAG 42325 >seq70036 Length=130556 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 37195 AACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCttt 37254 ||||| ||||||| || ||||| ||||| || || ||||| |||||||| | ||| || | Sbjct 53207 AACCT-CATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCT 53149 Query 37255 ttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAA 37314 | || | ||| || || || ||||| || || || || || || || || || || || | Sbjct 53148 TCTTCAACCAGAAGATAGCAGCAAAGGAACCCGAGAAAAAGATGCCCTCGACAGCGGCGA 53089 Query 37315 ATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAAT 37374 | || || | ||| ||| || || | | | | | ||||| || || ||||| Sbjct 53088 AAGCAACCACTCGTTCACCAAACGTGGCATTGTCGGCGTTGATCCAGTTGAGTGCCCAAT 53029 Query 37375 CTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAG 37420 ||||||| ||| || | || || |||||||| || ||||| Sbjct 53028 CTGCCTTCTGTTTGACTGGTGGCATAGTCTCAATTGCATTGAAGAG 52983 >seq37837 Length=14246 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/246 (67%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 37007 CCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTT 37066 |||||| | ||||||||| ||||| | |||| |||| | || || || || || | Sbjct 6572 CCTATCAGAAACAAATTCAATGTACTCCGACATCAGTTGAGCATTCATGCCTATCAGGTG 6631 Query 37067 TACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATT 37126 |||| | ||||| || ||| ||| ||||| ||||| ||||| || ||| | Sbjct 6632 GTCTGGTAGCGCATCCAATAGGAATTCTTTCTCTATGCAAACAGCCTCTTTCACAATACT 6691 Query 37127 AACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATC 37186 | || | || |||| |||||| || | |||| | || ||||| || Sbjct 6692 GATGATTCGCTTTTTGCTTGGTTTGCGTTTTAAGTAGGTGAACAGCAGGCAAGCAAAGTC 6751 Query 37187 ACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAA 37246 || || | ||||||||||||||| || | ||||||||| || || | || |||||||| Sbjct 6752 GCAGTGGAGACCTTCATCTCTACTGATGAGTTCATTAGAGAATGTCAGGCCAGGCATTAA 6811 Query 37247 ACCTCt 37252 ||||| Sbjct 6812 TCCTCT 6817 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 36884 TTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 || ||||||||| || |||| |||| || || ||||| ||||| ||||||||||| || | Sbjct 4722 TTGTTGATATTCACCGACTC-TCTTCTCAAAGAAATTGGTCTTGCCTTCTAGTGAGATGT 4780 Query 36943 TTTCCATAAAATCAAATGGATT 36964 ||||||| ||||||||||| || Sbjct 4781 TTTCCATGAAATCAAATGGGTT 4802 >seq21453 Length=27831 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 36884 TTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 || ||||||||| || |||| |||| || || ||||| ||||| ||||||||||| || | Sbjct 7121 TTGTTGATATTCACCGACTC-TCTTCTCAAAGAAATTGGTCTTGCCTTCTAGTGAGATGT 7063 Query 36943 TTTCCATAAAATCAAATGGATT 36964 ||||||| ||||||||||| || Sbjct 7062 TTTCCATGAAATCAAATGGGTT 7041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591756349843840