Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1554 125 6e-24 seq1757 120 2e-22 >seq1554 Length=107351 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| || || | ||| || || ||||| ||||| || |||||||| | Sbjct 13423 CCACCACGTAGACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCTGAA 13364 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||| || || || |||||||| || ||||| || || Sbjct 13363 AGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGG 13304 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||||||||| || || ||||||| |||| | ||||||| | ||| || Sbjct 13303 ATGCCTTCTTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACC 13244 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | || ||||| || | || || || || || ||||| Sbjct 13243 TCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 13197 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | ||| || ||||| ||||| || || ||||| || | | || | | | Sbjct 10288 ACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCC 10229 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || ||||| || | ||| || ||||| || || ||||||||||| Sbjct 10228 ATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTT 10169 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || ||| ||||||| |||| | ||||||| | ||| || ||||| || | Sbjct 10168 GTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAAT 10109 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || | || || || || || ||||| Sbjct 10108 GGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 10073 Score = 102 bits (112), Expect = 6e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 |||||| || | ||| ||||||||||| ||||| || ||||| || | | || | | | Sbjct 13184 ACGTAATACAAGATGGAGGGTAGATTCCTTTTGAATGTTGTAGTCTGACAATGTGCGGCC 13125 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || || || |||||||| || ||||| || || |||||||| || Sbjct 13124 ATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGGATGCCTTCCTT 13065 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || ||| ||| | || | |||||| | ||| || || || || | Sbjct 13064 GTCTTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTTGGTTCAACCTCCAGGGTAAT 13005 Query 101434 CGTTTTGCC 101442 ||||| || Sbjct 13004 GGTTTTACC 12996 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | ||| ||||| ||||| ||||| || ||||| |||| | || | | | Sbjct 18039 ACGCAAGACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGACAATGTGCGGCC 17980 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||| || || || || || | ||| || ||||| || ||||||||||| || Sbjct 17979 ATCTTCAAGTTGTTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTT 17920 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| |||||| | || | ||||| | ||| || ||||| || | Sbjct 17919 GTCTTGGATTTTGGTCTTTACATTCTCAATTGTGTCGCTTGGTTCTACCTCAAGGGTTAT 17860 Query 101434 CGTTTTGCC 101442 ||||| || Sbjct 17859 GGTTTTACC 17851 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | ||| || || || ||||| || || ||||| || | | || | | | Sbjct 10060 ACGCAAGACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCTGACAATGTGCGGCC 10001 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || || || || | ||| || ||||| || || ||||||||||| Sbjct 10000 ATCTTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCTTCTTT 9941 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || || ||| | || | |||||| | ||| || ||||| |||| Sbjct 9940 GTCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGAT 9881 Query 101434 CGTTTTGCC 101442 |||||||| Sbjct 9880 AGTTTTGCC 9872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | ||| || || || ||||| || || ||||| || | | || | | | Sbjct 10937 ACGCAAGACGAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGACAATGTACGGCC 10878 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || || || || | ||| || ||||| || || ||||||||||| Sbjct 10877 ATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTT 10818 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || || ||| | || | || ||| | ||| || ||||| |||| Sbjct 10817 GTCTTGGATCTTAGCCTTGACATTCTCAATGGTATCACTTGGTTCTACCTCAAGGGTGAT 10758 Query 101434 CGTTTTGCC 101442 |||||||| Sbjct 10757 AGTTTTGCC 10749 >seq1757 Length=74305 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | ||| || ||||| ||||| || || ||||| || | | || | | | Sbjct 30217 ACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCC 30276 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || ||||| || | ||| || ||||| || || ||||||||||| Sbjct 30277 ATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTT 30336 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || ||| ||||||| |||| | ||||||| | ||| || ||||| || | Sbjct 30337 GTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAAT 30396 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || | || || || || || ||||| Sbjct 30397 GGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 30432 Score = 109 bits (120), Expect = 4e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | |||||| || || | ||| || || ||||| ||||| || |||||||| | Sbjct 23150 CCACCACGTAAACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCTGAA 23209 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||| || || || || | ||| || ||||| || ||| Sbjct 23210 AGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGA 23269 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || ||||| || ||| ||||||| |||| | ||||||| | ||| || Sbjct 23270 ATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACC 23329 Query 101423 TCAAGAGT 101430 ||||| || Sbjct 23330 TCAAGGGT 23337 Score = 98.7 bits (108), Expect = 8e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | ||| || ||||| || ||||| || ||||| |||| | || | | | Sbjct 25189 ACGCAAGACAAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTACGGCC 25248 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||| || || || || |||||||| || ||||| || ||||||||||| || Sbjct 25249 ATCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCCTT 25308 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| |||||| | || | || || | ||| || ||||| |||| Sbjct 25309 GTCTTGGATTTTGGTCTTTACATTCTCAATTGTATCGCTTGGTTCTACCTCAAGGGTGAT 25368 Query 101434 CGTTTTGCC 101442 ||||| || Sbjct 25369 AGTTTTACC 25377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395912815343472