Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1757 105 1e-17 seq1554 84.2 4e-11 >seq1757 Length=74305 Score = 105 bits (116), Expect = 1e-17 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || || | || ||||| | |||| ||| || ||| || Sbjct 25169 ATTTGCATACCACCACGCAGACGCAAGACAAGATGGAGAGTAGACTCCTTTTGAATGTTG 25228 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| || || | ||| || | ||||||||| || || || || | || ||| Sbjct 25229 TAGTCGGACAATGTACGGCCATCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGA 25288 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| |||||||| |||| ||| ||| |||||| Sbjct 25289 TCTGGGGGAATGCCTTCCTTGTCTTGGATTTTGGTCTTTACATTCTCAATTGTATCGCTT 25348 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTG 193335 | || || || || || ||||||||||||| Sbjct 25349 GGTTCTACCTCAAGGGTGATAGTTTTACCTG 25379 >seq1554 Length=107351 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||| || || || || | || ||||| || || || |||||||| Sbjct 13352 ATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGGATGCCTTCTTT 13293 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || || | ||||| |||| |||||| || | ||||| || || || || Sbjct 13292 ATCTTGGATCTTAGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAAT 13233 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || |||||||| Sbjct 13232 GGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 13197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898803147006720