Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1757 109 1e-18 seq1554 109 1e-18 >seq1757 Length=74305 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || | ||| | ||||| |||||| ||| || || || Sbjct 30203 ATACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCT 30262 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| || | ||| || ||||||||||| | | || ||||| || Sbjct 30263 GACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGG 30322 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || ||||||||| |||| || | ||| Sbjct 30323 GGGATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCA 30382 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || ||||| | || || | || || ||||| Sbjct 30383 ACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 30432 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || | ||| | ||| | |||||| ||| || || || Sbjct 31923 ATACCACCACGAAGACGCAAGACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCG 31982 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || |||||||| |||| || | ||| || ||||| ||||| | | ||| ||||| || Sbjct 31983 GACAATGTTCGGCCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGG 32042 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || ||| || ||||| || | || | |||| Sbjct 32043 GGGATACCTTCTTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCACTTGGTTCT 32102 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 |||||||| || || ||||| || Sbjct 32103 ACTTCTAGGGTGATAGTTTTGCC 32125 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | ||| | || | || || ||| || || || Sbjct 32995 ATACCACCACGGAGACGCAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCT 33054 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| || | ||| || ||||||||||| | | || ||||| || Sbjct 33055 GACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGG 33114 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| ||||| || | || | ||| Sbjct 33115 GGAATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTCTCGATTGTGTCACTTGGTTCC 33174 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || ||||| ||||||| |||||| | ||| ||||||||||| Sbjct 33175 ACCTCAAGGGTGATAGTTTTGCCAGTTAGTGTTTTGACAAAGATCTGCATTTT 33227 >seq1554 Length=107351 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || | ||| | ||||| |||||| ||| || || || Sbjct 10302 ATACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCT 10243 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| || | ||| || ||||||||||| | | || ||||| || Sbjct 10242 GACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGG 10183 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || ||||||||| |||| || | ||| Sbjct 10182 GGGATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCA 10123 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || ||||| | || || | || || ||||| Sbjct 10122 ACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 10073 Score = 100 bits (110), Expect = 6e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || | ||| | ||| | |||||| ||| || || || Sbjct 9324 ATACCACCACGAAGACGCAAGACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCG 9265 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| || | ||| || ||||| ||||| | | ||| ||||| || Sbjct 9264 GACAATGTACGGCCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGG 9205 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || ||| || ||||| || | || | |||| Sbjct 9204 GGGATACCTTCTTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCACTTGGTTCT 9145 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 |||||||| || || ||||| || Sbjct 9144 ACTTCTAGGGTGATAGTTTTGCC 9122 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| || || | ||| | ||| | || || ||| || ||||| || Sbjct 13424 ACCACCACGTAGACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCTGA 13365 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | ||| || ||||| ||||| || | || ||||| || || Sbjct 13364 AAGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGG 13305 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||||||||| || ||| ||||||||| |||| || | ||| || Sbjct 13304 GATGCCTTCTTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTGTCACTTGGTTCAAC 13245 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| || ||||| | || || | || || ||||| Sbjct 13244 CTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 13197 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365 |||||||| | |||||||||||| | ||| | |||| | |||| || || || || || Sbjct 13198 ATACCACCACGAAGACGTAATACAAGATGGAGGGTAGATTCCTTTTGA-ATGTTGTAGTC 13140 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || ||||| || |||| || | ||| || ||||| ||||| || | || ||||| || Sbjct 13139 TGACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGG 13080 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| || || ||| ||||| || | || | ||| Sbjct 13079 GGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTTGGTTC 13020 Query 192486 TACTTCTAGAGTAATGGTTTTACC 192509 || || || |||||||||||||| Sbjct 13019 AACCTCCAGGGTAATGGTTTTACC 12996 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | ||| | || | || || ||| || || || Sbjct 8247 ATACCACCACGGAGACGCAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCC 8188 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| || | ||| || ||||||||||| | | || ||||| || Sbjct 8187 GACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGG 8128 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| ||||| || | || | ||| Sbjct 8127 GGAATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCC 8068 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || ||||| ||||||| |||||| | ||| ||||||||||| Sbjct 8067 ACCTCAAGGGTGATAGTTTTGCCAGTTAGTGTTTTGACAAAGATCTGCATTTT 8015 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | ||||| || || | ||| | || | || ||| || || || || || Sbjct 18053 ATACCACCACGGAGACGCAAGACAAGATGGAGGGTTGATTCCTTTTGA-ATGTTGTAGTC 17995 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || ||||| || |||| || | |||||| ||||| ||||| | | || ||||| || Sbjct 17994 GGACAATGTGCGGCCATCTTCAAGTTGTTTTCCAGCGAAGATAAGACGTTGCTGATCTGG 17935 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| ||||| | |||||||| || | || | ||| Sbjct 17934 GGGAATGCCTTCCTTGTCTTGGATTTTGGTCTTTACATTCTCAATTGTGTCGCTTGGTTC 17875 Query 192486 TACTTCTAGAGTAATGGTTTTACC 192509 ||| || || || ||||||||||| Sbjct 17874 TACCTCAAGGGTTATGGTTTTACC 17851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983525197149600