Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2747 102 2e-16 seq64782 87.8 5e-12 >seq2747 Length=185054 Score = 102 bits (112), Expect = 2e-16 Identities = 176/249 (71%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| | ||||| ||||| |||||||| || || ||||||| |||||||| || Sbjct 56932 ACCAGTTTCTGCAGTTTTCACAGCAGTATCAATAAGTCCCTCACGACCTCCCATAGCGTG 56991 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 ||||| | |||| ||| ||| ||||| ||| | ||| |||| || || || | Sbjct 56992 AAAGAACATCTCTGACGG-CGTCAGCCCGGCAAGGTACGAGTTCTCTACAAAGCCTCTGC 57050 Query 302726 CCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGT 302782 ||| || || ||||||| |||| | || || |||||||| |||| | ||| Sbjct 57051 TCTCAGGACCGTAATCGTC---CTTGATGAAATGAGGCAGGGTTCTGTGACGGAAACCGA 57107 Query 302783 ATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATAT 302842 | ||||||||||| || || ||||||||||| || | || | ||| | ||| | || | Sbjct 57108 ACGGGATACGCTTGCCTTCCACGTTCTGCTGACCTACACATGCAATGACCTGAGGAAAA- 57166 Query 302843 TTAAATCAC 302851 ||||||| Sbjct 57167 -GAAATCAC 57174 >seq64782 Length=8202 Score = 87.8 bits (96), Expect = 5e-12 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| | ||||| ||||| |||||||| || || ||||||| |||||||| || Sbjct 6210 ACCAGTTTCTGCAGTTTTCACAGCAGTATCAATAAGCCCCTCACGACCTCCCATAGCGTG 6269 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 ||||| | ||| || ||| || || ||| | ||| |||| || || || | Sbjct 6270 AAAGAACATTTCTGATGG-CGTCAGACCGGCAAGGTACGAGTTCTCTACAAAGCCTCTGC 6328 Query 302726 CCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGT 302782 ||| || || ||||||| |||| | || || |||||||| |||| | || Sbjct 6329 TCTCAGGACCGTAATCGTC---CTTGATGAAATGCGGCAGGGTTCTGTGACGGAAACCAA 6385 Query 302783 ATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 ||||||||||||| || || ||||||||||| || | || | ||| | ||| Sbjct 6386 ATGGGATACGCTTGCCTTCCACGTTCTGCTGACCTACACATGCAATGACCTG 6437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470390150341552