Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq29349 159 3e-34 seq1757 91.5 1e-13 seq1554 91.5 1e-13 >seq29349 Length=37262 Score = 159 bits (176), Expect = 3e-34 Identities = 186/251 (74%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 34320 AGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAG 34379 |||||| ||||| ||||| || || || | |||||||||||| ||||| ||| || || Sbjct 23147 AGTCTCTGGGTTATCACACTCTGGGCAGAGCACAAACTTGCGAATGAATATATCCAGGAG 23088 Query 34380 GTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATC 34439 | ||| | ||| | | || |||||||||||||| ||||| || ||||||||| | || Sbjct 23087 TTGCTGGAGTTTATCAGGGTGATGGGAGCCGTTGACTATGAAGCGCTCGTTTTTGAAGTC 23028 Query 34440 GACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACG 34499 | ||| |||||||| |||||||| || || ||| | || ||||| | | || | Sbjct 23027 AAACTGGGTTTGCGCACCCAGCTCACAGCCAAAGAATTTGCAAGGGTACGTTGGTGGCCT 22968 Query 34500 TCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTT 34559 || || || ||| ||| || ||||| || | || ||||||||||| || ||||| || Sbjct 22967 GCCCAGTGCTTTGCCGACCTCTGGCATATTTGCAATAACAGTCTTGATTCCATTGCCTTT 22908 Query 34560 TCCTTCGACCT 34570 |||||||||| Sbjct 22907 ACCTTCGACCT 22897 >seq1757 Length=74305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 110264 AGATTT-AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAAC 110322 |||||| |||||||| || ||||||||||| |||| |||||||| || ||| | || Sbjct 33234 AGATTTCAAAATGCAGATCTTTGTCAAAACACTAACTGGCAAAACTATCACCCTTGAGGT 33175 Query 110323 GGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC 110382 ||| || || || ||| | || ||| ||||| ||||| || ||| | || Sbjct 33174 GGAACCAAGTGACACAATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCC 33115 Query 110383 CGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGC 110442 | ||||| ||| | ||||| | ||| || || || || || |||| | | ||| || | Sbjct 33114 CCCAGATCAGCAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTC 33055 Query 110443 GGATTACAACATTCAAAAAGAATCTAC 110469 || |||||||| || || ||||| || Sbjct 33054 AGACTACAACATCCAGAAGGAATCCAC 33028 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || | || ||||| ||||||||| | || || || Sbjct 30432 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGT 30373 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | |||||| ||||| |||||||||||| | ||| ||||| Sbjct 30372 GACACTATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 30313 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | ||| || || || || || |||| | | ||| || | || |||||| Sbjct 30312 CAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAAC 30253 Query 110453 ATTCAAAAAGAATCTAC 110469 || || ||||| ||||| Sbjct 30252 ATCCAGAAAGAGTCTAC 30236 >seq1554 Length=107351 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 110264 AGATTT-AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAAC 110322 |||||| |||||||| || ||||||||||| |||| |||||||| || ||| | || Sbjct 8008 AGATTTCAAAATGCAGATCTTTGTCAAAACACTAACTGGCAAAACTATCACCCTTGAGGT 8067 Query 110323 GGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC 110382 ||| || || || | | | || ||| ||||| ||||| || ||| | || Sbjct 8068 GGAACCAAGTGACACAATTGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCC 8127 Query 110383 CGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGC 110442 | ||||| ||| | ||||| | ||| || || || || || |||| | | ||| || | Sbjct 8128 CCCAGATCAGCAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTC 8187 Query 110443 GGATTACAACATTCAAAAAGAATCTAC 110469 ||| |||||||| || || ||||| || Sbjct 8188 GGACTACAACATCCAGAAGGAATCCAC 8214 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || | || ||||| ||||||||| | || || || Sbjct 10073 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGT 10132 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | |||||| ||||| |||||||||||| | ||| ||||| Sbjct 10133 GACACTATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 10192 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | ||| || || || || || |||| | | ||| || | || |||||| Sbjct 10193 CAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAAC 10252 Query 110453 ATTCAAAAAGAATCTAC 110469 || || ||||| ||||| Sbjct 10253 ATCCAGAAAGAGTCTAC 10269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412460735046128