Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1554 154 1e-32 seq1757 149 5e-31 >seq1554 Length=107351 Score = 154 bits (170), Expect = 1e-32 Identities = 170/224 (76%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 |||||| || | ||| || |||||||| || || ||||| || |||| ||||| |||| Sbjct 8233 ACGCAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCGACAATG-TGCGGC 8175 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || ||||| || |||||| | || | | ||||||||| || ||||| ||||| | Sbjct 8174 CATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCT 8115 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || ||| ||| | || | |||||| |||| || ||||| || | Sbjct 8114 TGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCCACCTCAAGGGTGA 8055 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 ||||||||||||||| ||||| ||||| ||||||||||| ||| Sbjct 8054 TAGTTTTGCCAGTTAGTGTTTTGACAAAGATCTGCATTTTGAAA 8011 Score = 118 bits (130), Expect = 8e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| || | ||| || || || ||||| || ||||| || || | ||||| |||| Sbjct 10288 ACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATG-TGCGGC 10230 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || ||||| || |||||| | || | | ||||||||| || || || || |||| Sbjct 10229 CATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTT 10170 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | ||| ||| ||| |||| | ||||||| |||| || ||||| || | Sbjct 10169 TGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAA 10110 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| | ||| || || || || ||||| Sbjct 10109 TGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 10073 Score = 105 bits (116), Expect = 5e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| || | ||| || ||||| ||||| |||||||| || || | ||||| |||| Sbjct 10060 ACGCAAGACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCTGACAATG-TGCGGC 10002 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || ||||| || ||||| | || | | ||||||||| || || || || |||| Sbjct 10001 CATCTTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCTTCTT 9942 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || |||||| | || | |||||| ||||||| ||||| || | Sbjct 9941 TGTCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGA 9882 Query 29750 TAGTTTTGCC 29759 |||||||||| Sbjct 9881 TAGTTTTGCC 9872 Score = 105 bits (116), Expect = 5e-18 Identities = 141/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| || | ||| || || ||||| ||||||||||| || || | |||| ||||| Sbjct 18039 ACGCAAGACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGACAAT-GTGCGGC 17981 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || |||||||| ||||| | || | | ||||||||| || ||||| || || | Sbjct 17980 CATCTTCAAGTTGTTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCT 17921 Query 29690 TGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||||| ||||| || || ||| | || | ||||| ||||||| ||||| ||| Sbjct 17920 TGTCTTG-GATTTTGGTCTTTACATTCTCAATTGTGTCGCTTGGTTCTACCTCAAGGGTT 17862 Query 29749 ATAGTTTTGCC 29759 || ||||| || Sbjct 17861 ATGGTTTTACC 17851 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| || | |||||| ||||| ||||| || ||||| || || | ||||| | || Sbjct 9310 ACGCAAGACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAATG-TACGGC 9252 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || ||||| || ||||| | || | | |||||||| || || ||||| |||| Sbjct 9251 CATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGGATACCTTCTT 9192 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || || ||| | || | |||||| |||||||||| || || | Sbjct 9191 TGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCACTTGGTTCTACTTCTAGGGTGA 9132 Query 29750 TAGTTTTGCC 29759 |||||||||| Sbjct 9131 TAGTTTTGCC 9122 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| || | ||| || ||||| ||||| || ||||| || || | ||||| | || Sbjct 10937 ACGCAAGACGAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGACAATG-TACGGC 10879 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || ||||| || ||||| | || | | ||||||||| || || || || |||| Sbjct 10878 CATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTT 10819 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || |||||| | || | || ||| ||||||| ||||| || | Sbjct 10818 TGTCTTGGATCTTAGCCTTGACATTCTCAATGGTATCACTTGGTTCTACCTCAAGGGTGA 10759 Query 29750 TAGTTTTGCC 29759 |||||||||| Sbjct 10758 TAGTTTTGCC 10749 Score = 89.7 bits (98), Expect = 4e-13 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATCATCGAGTT 29641 ||| || || ||||| ||||||||||| || || | |||| ||||| ||| || |||| Sbjct 13172 ATGGAGGGTAGATTCCTTTTGAATGTTGTAGTCTGACAAT-GTGCGGCCATCTTCAAGTT 13114 Query 29642 GTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATT 29701 | || ||||| | ||||| | ||||||||| || || || || || |||||||| | | Sbjct 13113 GCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGGATGCCTTCCTTGTCTTGGATCT 13054 Query 29702 TTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759 | ||| ||| | || | |||||| |||| || || || || || ||||| || Sbjct 13053 TGGCTTTCACATTCTCAATGGTGTCACTTGGTTCAACCTCCAGGGTAATGGTTTTACC 12996 >seq1757 Length=74305 Score = 149 bits (164), Expect = 5e-31 Identities = 169/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 |||||| || | ||| || |||||||| || || ||||| || || | ||||| |||| Sbjct 33009 ACGCAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGACAATG-TGCGGC 33067 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || ||||| || |||||| | || | | ||||||||| || ||||| ||||| | Sbjct 33068 CATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCT 33127 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || ||| ||| | || | |||||| |||| || ||||| || | Sbjct 33128 TGTCTTGGATCTTGGCTTTCACATTCTCGATTGTGTCACTTGGTTCCACCTCAAGGGTGA 33187 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 ||||||||||||||| ||||| ||||| ||||||||||| ||| Sbjct 33188 TAGTTTTGCCAGTTAGTGTTTTGACAAAGATCTGCATTTTGAAA 33231 Score = 118 bits (130), Expect = 8e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| || | ||| || || || ||||| || ||||| || || | ||||| |||| Sbjct 30217 ACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATG-TGCGGC 30275 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || ||||| || |||||| | || | | ||||||||| || || || || |||| Sbjct 30276 CATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTT 30335 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | ||| ||| ||| |||| | ||||||| |||| || ||||| || | Sbjct 30336 TGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAA 30395 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| | ||| || || || || ||||| Sbjct 30396 TGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 30432 Score = 102 bits (112), Expect = 6e-17 Identities = 147/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || | || ||||| || | ||| || || || || ||||||||||| || || | | Sbjct 25178 CCACCACGCAGACGCAAGACAAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAC 25237 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 ||| || || ||| || |||||||| ||||| | ||||| | ||||||||| || || Sbjct 25238 AAT-GTACGGCCATCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGG 25296 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || |||||||| ||||| || || ||| | || | || || |||||| Sbjct 25297 AATGCCTTCCTTGTCTTG-GATTTTGGTCTTTACATTCTCAATTGTATCGCTTGGTTCTA 25355 Query 29738 CTTCAAGAGTTATAGTTTTGCC 29759 | ||||| || |||||||| || Sbjct 25356 CCTCAAGGGTGATAGTTTTACC 25377 Score = 102 bits (112), Expect = 6e-17 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| || | ||| || ||||| ||||| || ||||| || || | ||||| |||| Sbjct 29558 ACGCAAGACGAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGACAATG-TGCGGC 29616 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || || || || ||||| | || | | ||||||||| || || ||||| |||| Sbjct 29617 CATCTTCAAGCTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATACCTTCTT 29676 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || |||||| | || | |||||| ||||||| ||||| || | Sbjct 29677 TGTCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGA 29736 Query 29750 TAGTTTTGCC 29759 |||||||||| Sbjct 29737 TAGTTTTGCC 29746 Score = 102 bits (112), Expect = 6e-17 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 |||||| || | ||| || |||||||| || || ||||| || || | ||||| |||| Sbjct 30870 ACGCAGAACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGACAATG-TGCGGC 30928 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || ||||| || ||||| | || | | ||||||||| || || || || || | Sbjct 30929 CATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCCT 30988 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || |||||| | || | |||||| ||||||| ||||| || | Sbjct 30989 TGTCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGA 31048 Query 29750 TAGTTTTGCC 29759 |||||||||| Sbjct 31049 TAGTTTTGCC 31058 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| || | |||||| ||||| ||||| || ||||| || || | ||||| | || Sbjct 31937 ACGCAAGACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAATGTT-CGGC 31995 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || ||||| || ||||| | || | | |||||||| || || ||||| |||| Sbjct 31996 CATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGGATACCTTCTT 32055 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || || ||| | || | |||||| |||||||||| || || | Sbjct 32056 TGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCACTTGGTTCTACTTCTAGGGTGA 32115 Query 29750 TAGTTTTGCC 29759 |||||||||| Sbjct 32116 TAGTTTTGCC 32125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384863817953136