Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1757 161 2e-34 seq1554 161 2e-34 seq22013 84.2 4e-11 >seq1757 Length=74305 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || | || |||||||| |||||||| || || || || | Sbjct 30204 TACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTG 30263 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| ||||| |||||||||||||| || | ||| |||||||| | Sbjct 30264 ACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGG 30323 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| ||||||||||||||||||||||| || ||| | ||||| | Sbjct 30324 GGATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAA 30383 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||| || || || ||||| Sbjct 30384 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 30432 Score = 149 bits (164), Expect = 1e-30 Identities = 145/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||||| || | || ||||| ||||| || || || || ||||| || || | | | Sbjct 23159 AAACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCTGAAAGGGTGCGA 23218 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| |||||||| ||||| || | ||| |||||||| || || |||||| Sbjct 23219 CCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCC 23278 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||| ||||||||||||||||||||||| || ||| | ||||| || || | || Sbjct 23279 TTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTA 23338 Query 82773 ATCGTCT 82779 || |||| Sbjct 23339 ATGGTCT 23345 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | |||||| || | || || || ||||| ||||| || || || || | Sbjct 32996 TACCACCACGGAGACGCAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTG 33055 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| ||||| |||||||||||||| || | ||| |||||||| | Sbjct 33056 ACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGG 33115 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| ||||| ||||| ||||| || || || ||| | ||||| | Sbjct 33116 GAATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTCTCGATTGTGTCACTTGGTTCCA 33175 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | || || || ||||| || | || || ||||| ||||||||| Sbjct 33176 CCTCAAGGGTGATAGTTTTGCCAGTTAGTGTTTTGACAAAGATCTGCATT 33225 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || | || ||||| || |||||||| || || || || | Sbjct 31924 TACCACCACGAAGACGCAAGACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 31983 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||| || ||||| ||||| |||||||| ||||| || | || |||||||| | Sbjct 31984 ACAATGTTCGGCCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGG 32043 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| ||||| || || ||||| ||||| || ||| | ||||||| Sbjct 32044 GGATACCTTCTTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCACTTGGTTCTA 32103 Query 82762 CTTCCAAAGTTATCGTCTTGCCTG 82785 |||| | || || || ||||||| Sbjct 32104 CTTCTAGGGTGATAGTTTTGCCTG 32127 Score = 120 bits (132), Expect = 6e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||| || | || |||||||| || || || || || || || | Sbjct 25176 TACCACCACGCAGACGCAAGACAAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGG 25235 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| |||||||||||||| ||||| | | ||| |||||||| | Sbjct 25236 ACAATGTACGGCCATCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGG 25295 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| || || | |||||||| ||||| ||||| | ||||||| Sbjct 25296 GAATGCCTTCCTTGTCTTGGATTTTGGTCTTTACATTCTCAATTGTATCGCTTGGTTCTA 25355 Query 82762 CTTCCAAAGTTATCGTCTTGCCTG 82785 | || | || || || || |||| Sbjct 25356 CCTCAAGGGTGATAGTTTTACCTG 25379 Score = 120 bits (132), Expect = 6e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || | || || || ||||| ||||| || || || || || | | | || Sbjct 26457 ACGCAACACAAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGGCC 26516 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| |||||||||||||| || | ||| |||||||| || || || ||||| Sbjct 26517 ATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTT 26576 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| ||||| ||||| ||||| || ||| | ||||| || || | || || Sbjct 26577 GTCTTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTTGGTTCCACCTCAAGGGTAAT 26636 Query 82775 CGTCTTGCCTG 82785 || || |||| Sbjct 26637 GGTTTTACCTG 26647 >seq1554 Length=107351 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || | || |||||||| |||||||| || || || || | Sbjct 10301 TACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTG 10242 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| ||||| |||||||||||||| || | ||| |||||||| | Sbjct 10241 ACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGG 10182 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| ||||||||||||||||||||||| || ||| | ||||| | Sbjct 10181 GGATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAA 10122 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||| || || || ||||| Sbjct 10121 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 10073 Score = 156 bits (172), Expect = 8e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || | || ||||| ||||| || || || || ||||| || || | | ||| Sbjct 13412 ACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCTGAAAGGGTGCGACC 13353 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| |||||||| ||||| | | ||| |||||||| || || ||||| || Sbjct 13352 ATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGGATGCCTTCTTT 13293 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| ||||| ||||||||||||||||| || ||| | ||||| || || | || || Sbjct 13292 ATCTTGGATCTTAGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAAT 13233 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || || ||||| Sbjct 13232 GGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 13197 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | |||||| || | || || || ||||| ||||| || || || || | Sbjct 8246 TACCACCACGGAGACGCAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCG 8187 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| ||||| |||||||||||||| || | ||| |||||||| | Sbjct 8186 ACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGG 8127 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| ||||| ||||| ||||| ||||| || ||| | ||||| | Sbjct 8126 GAATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCCA 8067 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | || || || ||||| || | || || ||||| ||||||||| Sbjct 8066 CCTCAAGGGTGATAGTTTTGCCAGTTAGTGTTTTGACAAAGATCTGCATT 8017 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || | || ||||| || |||||||| || || || || | Sbjct 9323 TACCACCACGAAGACGCAAGACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 9264 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| ||||| |||||||| ||||| || | || |||||||| | Sbjct 9263 ACAATGTACGGCCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGG 9204 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| ||||| || || ||||| ||||| || ||| | ||||||| Sbjct 9203 GGATACCTTCTTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCACTTGGTTCTA 9144 Query 82762 CTTCCAAAGTTATCGTCTTGCCTG 82785 |||| | || || || ||||||| Sbjct 9143 CTTCTAGGGTGATAGTTTTGCCTG 9120 Score = 116 bits (128), Expect = 7e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || | || || || ||||| || || || || || || | Sbjct 18052 TACCACCACGGAGACGCAAGACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGG 17993 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| |||||||||||||| ||||| || | ||| |||||||| | Sbjct 17992 ACAATGTGCGGCCATCTTCAAGTTGTTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGG 17933 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| || || | |||||||| ||||| || || | ||||||| Sbjct 17932 GAATGCCTTCCTTGTCTTGGATTTTGGTCTTTACATTCTCAATTGTGTCGCTTGGTTCTA 17873 Query 82762 CTTCCAAAGTTATCGTCTTGCCTG 82785 | || | ||||| || || |||| Sbjct 17872 CCTCAAGGGTTATGGTTTTACCTG 17849 >seq22013 Length=127307 Score = 84.2 bits (92), Expect = 4e-11 Identities = 124/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA-CCGTCTTCTAGTTGTTTTCC 82672 || ||||||||||| || || ||||| | | ||||| | || ||||| || ||||| || Sbjct 37434 GTGGATTCTTTCTGAATGTTGTAATCCAACA-AATTCAAGCCATCTTCAAGCTGTTTACC 37492 Query 82673 AGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTT 82732 || |||| || | || ||||||| || || ||||| || ||||| ||||| || || Sbjct 37493 TGCGAAGAGAAGACGCTGCTGATCTGAGGGAATGCCTTCTTTGTCTTGGATCTTGGCCTT 37552 Query 82733 TACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTG 82785 ||||| || || || ||| | |||| || | | || || || || |||| Sbjct 37553 CACATTCTCTATGGTGTCACTCAGTTCAACACCAAGGGTAATGGTTTTACCTG 37605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980874969980944