Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1554 95.1 1e-14 seq1757 89.7 5e-13 >seq1554 Length=107351 Score = 95.1 bits (104), Expect = 1e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || || ||||| || Sbjct 10041 GTGGACTCTTTCTGAATGTTGTAGTCTGACAATGTGCGGCCA-TCTTCAAGTTGCTTTCC 9983 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || ||||| || || ||||||||||| ||||| |||||| ||| Sbjct 9982 AGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGATCTTAGCCTT 9923 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || | ||||| ||||| | || || || || | ||||| |||||||| Sbjct 9922 GACATTCTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATAGTTTTGCC 9872 Score = 86.0 bits (94), Expect = 6e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| ||| || || | | | || || || ||||| || Sbjct 9291 GTGGACTCTTTCTGGATGTTGTAGTCGGACAATGTACGGCCA-TCTTCAAGTTGCTTTCC 9233 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || || ||||| ||||| ||||| |||||| ||| Sbjct 9232 AGCGAAGATAAGACGCTGCTGATCTGGGGGGATACCTTCTTTGTCTTGGATCTTAGCCTT 9173 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 | | ||||| ||||| | || || || || | ||||| |||||||| Sbjct 9172 AACATTCTCAATTGTGTCACTTGGTTCTACTTCTAGGGTGATAGTTTTGCC 9122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || || ||| | | | || || || ||||| || Sbjct 10269 GTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCCA-TCTTCAAGTTGCTTTCC 10211 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || || ||||| || || ||||||||||| ||||| ||||||| || Sbjct 10210 AGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCTTT 10151 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | || || || || | ||| | ||| ||||| || || || Sbjct 10150 TACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGT 10091 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 10090 CTTGACGAAGATTTGCAT 10073 >seq1757 Length=74305 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || |||||||| || Sbjct 29577 GTGGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCCA-TCTTCAAGCTGCTTTCC 29635 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || ||||| || || ||||| ||||| ||||| |||||| ||| Sbjct 29636 AGCGAAGATAAGACGTTGCTGATCTGGGGGGATACCTTCTTTGTCTTGGATCTTAGCCTT 29695 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || | ||||| ||||| | || || || || | ||||| |||||||| Sbjct 29696 GACATTCTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATAGTTTTGCC 29746 Score = 86.0 bits (94), Expect = 6e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| || || ||| | | | || || || ||||| || Sbjct 30889 GTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTGCGGCCA-TCTTCAAGTTGCTTTCC 30947 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || ||||| || || ||||||||||||||||| |||||| ||| Sbjct 30948 AGCGAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCCTTGTCTTGGATCTTAGCCTT 31007 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || | ||||| ||||| | || || || || | ||||| |||||||| Sbjct 31008 GACATTCTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATAGTTTTGCC 31058 Score = 86.0 bits (94), Expect = 6e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATC-GCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || | | || | | | | || || || ||||| || Sbjct 31956 GTGGACTCTTTCTGGATGTTGTAGTCGGACAATGTTCGGCCA-TCTTCAAGTTGCTTTCC 32014 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || || ||||| ||||| ||||| |||||| ||| Sbjct 32015 AGCGAAGATAAGACGCTGCTGATCTGGGGGGATACCTTCTTTGTCTTGGATCTTAGCCTT 32074 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 | | ||||| ||||| | || || || || | ||||| |||||||| Sbjct 32075 AACATTCTCAATTGTGTCACTTGGTTCTACTTCTAGGGTGATAGTTTTGCC 32125 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || || ||| | | | || || || ||||| || Sbjct 30236 GTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCCA-TCTTCAAGTTGCTTTCC 30294 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || || ||||| || || ||||||||||| ||||| ||||||| || Sbjct 30295 AGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCTTT 30354 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | || || || || | ||| | ||| ||||| || || || Sbjct 30355 TACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGT 30414 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 30415 CTTGACGAAGATTTGCAT 30432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482963387239040