Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_025431.1 Length=45718 Score E Sequences producing significant alignments: (Bits) Value seq54356 138 3e-28 >seq54356 Length=14911 Score = 138 bits (152), Expect = 3e-28 Identities = 391/597 (65%), Gaps = 24/597 (4%) Strand=Plus/Minus Query 43371 CACCTGAACCTACCGGACCCCACGAAGGTCCAGTACGACATCGCTTCGTTCCTCCAGCAT 43430 ||||||||||| || || ||||| ||||||| || || || || || || Sbjct 2930 CACCTGAACCTTCCAGAGCCCACCCCGGTCCAGATGGATATGGCGCGGTATATCGCTAAT 2871 Query 43431 GGCCCCAAGCGTCTCATCATCGAGGCGTTCCGAGGGGTCGGCAAATCGTGGGTCACCTCG 43490 || ||||||||| ||| | |||| ||||| || || || ||||| |||||||| Sbjct 2870 GGGCCCAAGCGTTCCATGGTGCAGGCATTCCGGGGCGTGGGTAAATCACATATCACCTCG 2811 Query 43491 GCCT---TCGTCTGCTGGCTGCTCTACTGCGATCCCCAAACCAAGATACTCGTCATCTCG 43547 |||| | ||||| ||||||||| | || || | ||||| | || ||||| Sbjct 2810 GCCTATGTTGTCTGGCGGCTGCTCT---GTGACCCTGAGCTGAAGATCATGGTTGTCTCG 2754 Query 43548 GCCTCCAAGCAGCGGTCGGACGACTTCTCGACCTTCACCATGCGCCTCATCTTCGAGATG 43607 ||||||||| | || | || | ||||| || || ||| ||| || ||| | | Sbjct 2753 GCCTCCAAGGACCGCGCTGATCAATTCTCCACATTTACCCAGCGTCTGATC-----GCT- 2700 Query 43608 GAGCTG-CTGGCC-----CATCTGAGGCCCGTGGACGGCCAGCGCATGTCCAAGGTGGCC 43661 |||||| |||||| ||||| | ||| || | |||| | | |||||| | || Sbjct 2699 GAGCTGCCTGGCCTCGAGCATCTAAAACCCAAGGGGGACCAGAGAAACTCCAAGATCGCA 2640 Query 43662 TTCGACGTCGCACCGGCTCGCGCCTCTCACGCGCCGTCTGTGAAGTCGCTGGGCATCACC 43721 || || || | || || || |||||| |||| || || || || | ||||| || Sbjct 2639 TTTGATGTTGGGCCCGCCAAGGCGTCTCACTCGCCCTCAGTCAAATCTGTCGGCATTACA 2580 Query 43722 TCGCAGATCGCGGGGTCGCGCGCCAACGTCATCATCGCGGACGACATCGAAGTCCCGAAC 43781 ||||| |||| || || || | | | ||||| || ||| | || |||| |||| Sbjct 2579 GGCCAGATGACGGGCTCTCGTGCTGATCTGCTGATCGCTGATGACGTTGAGGTCCTGAAC 2520 Query 43782 AATTCCGACACCTCGCTCAAGCGCGAGAAGCTGTCCGAGCAGATCAAGGAGTTCGACGCC 43841 || ||| ||| || | ||| || ||||| |||| | ||||||| || |||||| Sbjct 2519 AACGCCGCAACCCAGCAAATGCGGGACAAGCTCGGCGAGGTGGTCAAGGAATTTGACGCC 2460 Query 43842 GTCCTCTCGCCGGGTG------GCCGCATCATCTACCTCGGCACCCCGCAGACCGAGATG 43895 ||||| ||||| | ||||||| | |||||||| ||||| ||| ||| Sbjct 2459 ATCCTCAAGCCGGACGAATCAAGCCGCATTTTGTACCTCGGGACCCCCCAGTGTGAGGAC 2400 Query 43896 TCGATCTACAACCTCCTGCCGGATCGCGGCTACGTGGTCCGCATCTGGCCAGCCAGG 43952 || | |||||| | || || ||||| || | || | | ||||| |||||| Sbjct 2399 TCCCTTTACAACAAGTTACCAGAACGCGGTTATGAAGTGCAGGTTTGGCCTGCCAGG 2343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146044603855360