Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq72101 104 3e-17 seq70036 100 4e-16 seq37837 96.9 5e-15 seq21453 96.9 5e-15 >seq72101 Length=85746 Score = 104 bits (114), Expect = 3e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 40003 ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATA 40062 ||| || || || || |||||||| || ||||| || ||||| |||||| |||||| | Sbjct 44438 ATTCTCGTTAACGATGCCATCACTGGCAGCAAAGAAGGCCAACACATGTGAAATAAAGTG 44497 Query 40063 TTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 40122 || || || | | || | ||| | | || || || || | ||| ||||| || Sbjct 44498 CTTCTCGTCCTTGTTGAGCTTGTCCCAATGACCCATGTCCTTGGACAGATCCACTTCCTC 44557 Query 40123 AGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTAT 40182 ||||||| || |||||||||||||| ||||||||| ||| || || | |||| || Sbjct 44558 GACTGTCCAGAATGACGCCTCTGCCTTCTTGTACATGAGCCAGATGTCTTGGAATTGGAT 44617 Query 40183 TGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATGGGTTC 40227 ||| || || || |||| | ||||| | | ||| | |||||| Sbjct 44618 TGGGAAGATGACGAATCGACGGGGATTCTCTCTAAGTAGGGGTTC 44662 >seq70036 Length=130556 Score = 100 bits (110), Expect = 4e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 40003 ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATA 40062 ||| || || || || |||||||| || ||||| || ||||| ||||| |||||| | Sbjct 51607 ATTCTCGTTGACGATGCCATCACTGGCAGCAAAGAACGCCAACACATGCGAAATAAAGTG 51548 Query 40063 TTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 40122 || || || | | || | ||| | | || || || || | ||| || || || Sbjct 51547 CTTCTCGTCCTTGTTGAGCTTGTCCCAATGACCCATGTCCTTGGACAGATCCACCTCCTC 51488 Query 40123 AGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTAT 40182 ||||||| || |||||||||||||| ||||||||| ||| || || | |||| || Sbjct 51487 GACTGTCCAGAATGACGCCTCTGCCTTCTTGTACATGAGCCAGATGTCTTGGAATTGGAT 51428 Query 40183 TGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATGGGTTC 40227 ||| || || ||||||| | ||||| | | ||| | |||||| Sbjct 51427 TGGGAAGATGACAAATCGACGGGGATTCTCTCTAAGTAGGGGTTC 51383 >seq37837 Length=14246 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 39694 CTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGC 39753 |||||| | ||||||||| || ||||| || || || || ||||| || |||||||| || Sbjct 9317 CTTTTTTAACCAAAATATAGCTGCAAATGACCCTGAGAAAAAGATTCCCTCTACTGCGGC 9376 Query 39754 AAATGCAACAAGTCTCTCTCCGTAACTT---GTATCATTATGTATCCACTTCTGTGCCCA 39810 || ||||||||||| || || | | ||||| ||| ||||| ||| ||||| Sbjct 9377 GAAAGCAACAAGTCTTTCACCAAACGGTGCCGTATCCCCATGGATCCATTTCAACGCCCA 9436 Query 39811 ATCAGCTTTCTTCTTTACACAAGGCATTG 39839 || |||||| |||| ||||| |||| || Sbjct 9437 CTCGGCTTTCCTCTTCACACATGGCACTG 9465 >seq21453 Length=27831 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 39694 CTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGC 39753 |||| | | ||||||||| || ||||| || || || || ||||| || |||||||| || Sbjct 3478 CTTTCTTAACCAAAATATAGCTGCAAATGACCCTGAGAAAAAGATTCCCTCTACTGCGGC 3419 Query 39754 AAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCA 39810 ||| ||||||||||| || || | || |||| ||| ||||| ||| ||||| Sbjct 3418 AAAGGCAACAAGTCTTTCACCAAACGGTGCGTTATCCCCATGGATCCATTTCAACGCCCA 3359 Query 39811 ATCAGCTTTCTTCTTTACACAAGGCATTG 39839 || |||||| |||| ||||| |||| || Sbjct 3358 CTCGGCTTTCCTCTTGACACATGGCACTG 3330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686258846893440