Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1757 93.3 4e-14 seq1554 93.3 4e-14 >seq1757 Length=74305 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || | ||| | ||||| ||||| || || |||||||| || |||| | Sbjct 30218 CGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCCA 30277 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || || || || || | || ||||| || ||||| || || | || ||||| Sbjct 30278 TCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTTG 30337 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| ||| | |||| | |||||| | | |||||| || || || || Sbjct 30338 TCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATG 30397 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||| || || || || || |||||||||||| Sbjct 30398 GTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCATA 30433 >seq1554 Length=107351 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || | ||| | ||||| ||||| || || |||||||| || |||| | Sbjct 10287 CGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCCA 10228 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || || || || || | || ||||| || ||||| || || | || ||||| Sbjct 10227 TCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTTG 10168 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| ||| | |||| | |||||| | | |||||| || || || || Sbjct 10167 TCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATG 10108 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||| || || || || || |||||||||||| Sbjct 10107 GTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCATA 10072 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073 |||||| || || || | ||||| || | ||| | || || || ||||| || ||||| Sbjct 13430 TTATTGACCACCACGTAGACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTA 13371 Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133 || | | |||| | ||||| || || || || ||| | || | ||| || ||||| Sbjct 13370 ATCTGAAAGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATC 13311 Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193 || || | || |||||||| |||||| ||| | |||| | |||||| | | Sbjct 13310 TGGGGGGATGCCTTCTTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTGTCACTTGG 13251 Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||| || || || || | ||||| || || || || || |||||||||||| Sbjct 13250 TTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCATA 13196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424542378893952