Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq39745 95.1 2e-14 seq8201 95.1 2e-14 seq72101 82.4 1e-10 seq70036 82.4 1e-10 >seq39745 Length=16847 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| ||||||||| | ||||||| ||||| | |||||| ||||||| |||||| Sbjct 13277 TCTTCTTGTGTAGATGTTGCTGGTGTATGCTTCAATGGCTTCATTGTTACCCAGGATTTG 13218 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTT 110817 ||||| ||||| || ||||| ||||| | | ||||||||||| | || | | ||| Sbjct 13217 GGCGGTTGAGGCAGTAGGCATGGGTGCTAATAGTAGACTGTTACGTACGCCATGTTTCTT 13158 Query 110818 GATGCGTTCCTTGAGAACATCCCAGTC 110844 ||| |||| || || ||||||| Sbjct 13157 GATCTCGGCCTTAAGGGCAGCCCAGTC 13131 >seq8201 Length=93372 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| ||||||||| | ||||||| ||||| | |||||| ||||||| |||||| Sbjct 59171 TCTTCTTGTGTAGATGTTGCTGGTGTATGCTTCAATGGCTTCATTGTTACCCAGGATTTG 59230 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTT 110817 ||||| ||||| || ||||| ||||| | | ||||||||||| | || | | ||| Sbjct 59231 GGCGGTTGAGGCAGTAGGCATGGGTGCTAATAGTAGACTGTTACGTACGCCATGTTTCTT 59290 Query 110818 GATGCGTTCCTTGAGAACATCCCAGTC 110844 ||| |||| || || ||||||| Sbjct 59291 GATCTCGGCCTTAAGGGCAGCCCAGTC 59317 >seq72101 Length=85746 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | || | ||||| ||||| || ||||||||||| ||||| ||||| Sbjct 42103 CCTCATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCTTCT 42162 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||||||| | ||||| ||| || || || ||||| ||||| ||||| ||| || || Sbjct 42163 TCAACCAGAAGATAGCAGCA-AAGGAACCTGAGAAAAAGATGCCCTCGACAGCGGCGAAA 42221 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 |||| | ||||| | || | | | | |||| | ||| || | |||||| | Sbjct 42222 GCAACCACTCGTTCACCAAACGTGGCATTGTCAGCATTGATCCAGTTGAGTGCCCAATCT 42281 Query 122857 GCCTTCT 122863 ||||||| Sbjct 42282 GCCTTCT 42288 >seq70036 Length=130556 Score = 82.4 bits (90), Expect = 1e-10 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | || | ||||| ||||| || ||||||||||| ||||| ||||| Sbjct 53205 CCTCATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCTTCT 53146 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||||||| | ||||| ||| || || || ||||| ||||| ||||| ||| || || Sbjct 53145 TCAACCAGAAGATAGCAGCA-AAGGAACCCGAGAAAAAGATGCCCTCGACAGCGGCGAAA 53087 Query 122797 GCAA 122800 |||| Sbjct 53086 GCAA 53083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627437756121600