Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq57202 104 3e-17 seq13736 100 3e-16 seq7170 100 3e-16 seq72101 96.9 4e-15 seq70036 96.9 4e-15 >seq57202 Length=72081 Score = 104 bits (114), Expect = 3e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || |||||||||| ||| |||||||||||||||||| ||| | ||||| || || Sbjct 22257 GTAAAGATGTAACGAGGGCTAGCAGCATCCTTGCCACCATGAAGCCTAGTACCAAACTGA 22198 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | ||| ||||| | ||| ||| || ||||||||| || |||||||||| Sbjct 22197 CCAATAGGTTGCAACAGGTTGATGTTATTGCTGCTCACAAAGTTCTGCGCCAAGTTGATG 22138 Query 117425 ATCGTAC 117431 || |||| Sbjct 22137 ATTGTAC 22131 >seq13736 Length=200400 Score = 100 bits (110), Expect = 3e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| |||||||||||||||||||||| || | ||||| || || Sbjct 53491 GTGAAGATGTAACGAGGGCTTGCAGCATCCTTGCCACCATGGAGCCTGGTACCAAACTGA 53550 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 || | || | ||| ||||| | ||| ||| || ||||||||| || |||||||||| Sbjct 53551 CCTATAGGTTGCAACAGGTTGATGTTATTGCTGCTCACAAAGTTCTGTGCCAAGTTGA 53608 >seq7170 Length=50474 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 117303 GAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATT 117362 |||| || ||||| |||| ||| |||||||||||||||||| ||| | ||||| || | Sbjct 28363 GAGTAAAGATGTAGCGAGGGCTAGCAGCATCCTTGCCACCATGAAGCCTGGTACCAAACT 28304 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | ||| | || | ||| ||||| | ||| ||| || ||||||||| || |||||||||| Sbjct 28303 GACCAATAGGTTGCAACAGGTTGATGTTATTGCTGCTCACAAAGTTCTGTGCCAAGTTGA 28244 >seq72101 Length=85746 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| ||||| ||||| || || | | || ||||| | || | ||||||| Sbjct 42105 TCATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCTTCTTC 42164 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| ||||| ||| |||||||| ||| |||||||| |||||| || || || Sbjct 42165 AACCAGAAGATAGCAGCAAAGGAACCTGAGAAAAAGATGCCCTCGACAGCGGCGAAAGCA 42224 Query 74892 ACAAGGCGTTGCGCGAACGGTGCA---TCGGAAGTCATCCAAGTCTGAGCCCATTCAGCT 74948 || | |||| | |||| ||| || | | | ||||| | | ||||| || || Sbjct 42225 ACCACTCGTTCACCAAACGTGGCATTGTCAGCATTGATCCAGTTGAGTGCCCAATCTGCC 42284 Query 74949 TTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG 74990 || ||||||| | || | ||| || || || | ||||||| Sbjct 42285 TTCTGTTTGACTGGTGGCATAGTCTCAATTGCATTGAAGAGG 42326 >seq70036 Length=130556 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| ||||| ||||| || || | | || ||||| | || | ||||||| Sbjct 53203 TCATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCTTCTTC 53144 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| ||||| ||| |||||||| ||| |||||||| |||||| || || || Sbjct 53143 AACCAGAAGATAGCAGCAAAGGAACCCGAGAAAAAGATGCCCTCGACAGCGGCGAAAGCA 53084 Query 74892 ACAAGGCGTTGCGCGAACGGTGCA---TCGGAAGTCATCCAAGTCTGAGCCCATTCAGCT 74948 || | |||| | |||| ||| |||| | ||||| | | ||||| || || Sbjct 53083 ACCACTCGTTCACCAAACGTGGCATTGTCGGCGTTGATCCAGTTGAGTGCCCAATCTGCC 53024 Query 74949 TTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG 74990 || ||||||| | || | ||| || || || | ||||||| Sbjct 53023 TTCTGTTTGACTGGTGGCATAGTCTCAATTGCATTGAAGAGG 52982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546698224220800