Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq4605 87.8 1e-12 seq37879 84.2 2e-11 >seq4605 Length=47375 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29873 TTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCT 29932 ||||| ||||| | || || |||||||| ||||| || || | | || || || ||| Sbjct 44479 TTCAGTGGTTCTATGTGATTGAGGTAGACATGAGCATCGCCAATTGTATGTACGAAATCT 44538 Query 29933 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29992 || || | || || |||| | || |||||||| || ||||||||||| || |||||| Sbjct 44539 CCAGGCTTCAGACCTGTGATTTCTGCTATCATGTAGGTTAGGAGAGAGTAACTTGCGATG 44598 Query 29993 TTAAAGGGTACCCCGAGCCCC 30013 || || ||||| || || ||| Sbjct 44599 TTGAATGGTACGCCAAGACCC 44619 >seq37879 Length=18190 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29873 TTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCT 29932 ||||| || || | || | |||||||| ||||| || || | | || ||||| ||| Sbjct 3032 TTCAGTGGCTCAATGTGGTTGAGGTAGACATGAGCATCGCCAATTGTATGTACAAAATCT 2973 Query 29933 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29992 || || | || || |||| | || |||||||| || ||||||||||| || |||||| Sbjct 2972 CCAGGCTTCAGACCTGTGATTTCTGCTATCATGTAGGTTAGGAGAGAGTAACTTGCGATG 2913 Query 29993 TTAAAGGGTACCCCGAGCCCC 30013 || || ||||| || || ||| Sbjct 2912 TTGAATGGTACACCAAGACCC 2892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405935560372032