Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1757 116 2e-21 seq1554 116 2e-21 >seq1757 Length=74305 Score = 116 bits (128), Expect = 2e-21 Identities = 164/225 (73%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | |||||| ||| ||||| || ||||| || ||||| | ||| || Sbjct 33007 AGACGCAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTGCGG 33066 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || ||||| || | ||| || || || || || | |||||| Sbjct 33067 CCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCC 33126 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| |||| || | ||| || | |||||||| | | | ||||| || | || Sbjct 33127 TTGTCTTGGATC-TTGGCTTTCACATTCTCGATTGTGTCACTTGGT-TCCACCTCAAGGG 33184 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 | || ||||| || |||| ||||| ||||| |||||||| |||| Sbjct 33185 TGATAGTTTTGCCAGTTAGTGTTTTGACAAAGATCTGCATTTTGA 33229 Score = 104 bits (114), Expect = 1e-17 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | ||||||||| ||||||||||||||| || || || | ||| || Sbjct 25187 AGACGCAAGACAAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTACGG 25246 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| || || || || ||||| || || || || || | || ||| Sbjct 25247 CCATCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCC 25306 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTCCACTTCCACG 34665 |||||| ||| ||| || || || | |||||| | ||| | ||| || || | | Sbjct 25307 TTGTCTTGGAT-TTTGGTCTTTACATTCTCAATTGTATCGCTTGGTTCT--ACCTCAAGG 25363 Query 34666 GTTATCGTTTTACC 34679 || || |||||||| Sbjct 25364 GTGATAGTTTTACC 25377 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 |||||| || | ||||||||| |||||||| ||||| ||||||||||| || || | Sbjct 23161 ACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCTGAAAGGGTGCGACC 23220 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 ||||||||||| || || || || || | ||| || || || || || | || ||||| Sbjct 23221 ATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTT 23280 Query 34611 GTCTGTGATCTTTTGTTTTA 34630 |||| ||||||| ||||| Sbjct 23281 GTCTTGGATCTTTGCTTTTA 23300 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| || | ||| |||||| ||| || || ||||| || || || Sbjct 31926 CCACCACGAAGACGCAAGACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 31985 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||||| | ||||||||||| || || || || || | |||||| || || || || Sbjct 31986 AATGTTCGGCCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGG 32045 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTCC 34656 | || || |||||| |||| || | ||||| | |||||||| ||| | ||| Sbjct 32046 ATACCTTCTTTGTCTTGGATC-TTAGCCTTAACATTCTCAATTGTGTCACTTGGTTCT-- 32102 Query 34657 ACTTCCACGGTTATCGTTTTACC 34679 ||||| | ||| || ||||| || Sbjct 32103 ACTTCTAGGGTGATAGTTTTGCC 32125 Score = 91.5 bits (100), Expect = 9e-14 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| | ||| || ||| ||||| || ||||| || || || | ||| || Sbjct 26455 AGACGCAACACAAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGG 26514 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || ||||| || | ||| || || || || || | |||||| Sbjct 26515 CCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCC 26574 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| |||| || | ||| || | ||| ||||| | | | ||||| || | || Sbjct 26575 TTGTCTTGGATC-TTGGCTTTCACATTCTCAATGGTGTCACTTGGT-TCCACCTCAAGGG 26632 Query 34667 TTATCGTTTTACC 34679 | || |||||||| Sbjct 26633 TAATGGTTTTACC 26645 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | ||||||||| ||| || || ||||| || ||||| | ||| || Sbjct 30215 AGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGG 30274 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || ||||| || | ||| || || || || || | || || Sbjct 30275 CCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCT 30334 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGT 34667 |||||| ||||||| ||||| | ||| ||||| | | | || || || | ||| Sbjct 30335 TTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGT-TCAACCTCAAGGGT 30393 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || || || ||||| Sbjct 30394 AATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 30432 >seq1554 Length=107351 Score = 116 bits (128), Expect = 2e-21 Identities = 164/225 (73%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | |||||| ||| ||||| || ||||| || || || | ||| || Sbjct 8235 AGACGCAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGG 8176 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || ||||| || | ||| || || || || || | |||||| Sbjct 8175 CCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCC 8116 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| |||| || | ||| || | ||||||||| | | | ||||| || | || Sbjct 8115 TTGTCTTGGATC-TTGGCTTTCACATTCTCAATTGTGTCACTTGGT-TCCACCTCAAGGG 8058 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 | || ||||| || |||| ||||| ||||| |||||||| |||| Sbjct 8057 TGATAGTTTTGCCAGTTAGTGTTTTGACAAAGATCTGCATTTTGA 8013 Score = 98.7 bits (108), Expect = 6e-16 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | |||||| || |||||||||||||| || || || | ||| || Sbjct 18041 AGACGCAAGACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGACAATGTGCGG 17982 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| || || || || | ||| || || || || || | || ||| Sbjct 17981 CCATCTTCAAGTTGTTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCC 17922 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTCCACTTCCACG 34665 |||||| ||| ||| || || || | |||||||| ||| | ||| || || | | Sbjct 17921 TTGTCTTGGAT-TTTGGTCTTTACATTCTCAATTGTGTCGCTTGGTTCT--ACCTCAAGG 17865 Query 34666 GTTATCGTTTTACC 34679 ||||| |||||||| Sbjct 17864 GTTATGGTTTTACC 17851 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | ||||||||| |||||||| ||||| ||||||||||| || || Sbjct 13414 AGACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAATCTGAAAGGGTGCGA 13355 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || || || || ||||| || || || || || | || || Sbjct 13354 CCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGGATGCCTTCT 13295 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGT 34667 || ||| |||||| ||||| | ||| ||||| | | | || || || | ||| Sbjct 13294 TTATCTTGGATCTTAGCTTTTACATTTTCAATAGTGTCACTTGGT-TCAACCTCAAGGGT 13236 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || || || ||||| Sbjct 13235 AATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 13197 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| || || | |||||| || |||||||||||||| || ||||| Sbjct 13195 CCACCACGAAGACGTAATACAAGATGGAGGGTAGATTCCTTTTGAATGTTGTAGTCTGAC 13136 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||||||||| || || || || || ||||| || || || || || Sbjct 13135 AATGTGCGGCCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGG 13076 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | || ||||||||| |||| || | ||| || | ||| ||||| | | | || | Sbjct 13075 ATGCCTTCCTTGTCTTGGATC-TTGGCTTTCACATTCTCAATGGTGTCACTTGGT-TCAA 13018 Query 34658 CTTCCACGGTTATCGTTTTACC 34679 | |||| ||| || |||||||| Sbjct 13017 CCTCCAGGGTAATGGTTTTACC 12996 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | ||||||||| ||| || || ||||| || ||||| | ||| || Sbjct 10290 AGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGG 10231 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || ||||| || | ||| || || || || || | || || Sbjct 10230 CCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCT 10171 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGT 34667 |||||| ||||||| ||||| | ||| ||||| | | | || || || | ||| Sbjct 10170 TTGTCTTGGATCTTTGCTTTTACATTTTCAATAGTGTCACTTGGT-TCAACCTCAAGGGT 10112 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || || || ||||| Sbjct 10111 AATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 10073 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | |||||||||| ||| || |||||||| || ||||| | ||| || Sbjct 10062 AGACGCAAGACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCTGACAATGTGCGG 10003 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || || || || | ||| || || || || || | || || Sbjct 10002 CCATCTTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCTTCT 9943 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 9942 TTGTCTTGGATCTT 9929 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| || | ||| |||||| ||| || || ||||| || || || Sbjct 9321 CCACCACGAAGACGCAAGACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 9262 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||||||||| || || || || || | |||||| || || || || Sbjct 9261 AATGTACGGCCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGG 9202 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTCC 34656 | || || |||||| |||| || | ||||| | |||||||| ||| | ||| Sbjct 9201 ATACCTTCTTTGTCTTGGATC-TTAGCCTTAACATTCTCAATTGTGTCACTTGGTTCT-- 9145 Query 34657 ACTTCCACGGTTATCGTTTTACC 34679 ||||| | ||| || ||||| || Sbjct 9144 ACTTCTAGGGTGATAGTTTTGCC 9122 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | |||||||||| ||| || || ||||| || ||||| | ||| || Sbjct 10939 AGACGCAAGACGAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGACAATGTACGG 10880 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || || || || | ||| || || || || || | || || Sbjct 10879 CCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCT 10820 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 10819 TTGTCTTGGATCTT 10806 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| | ||| || ||| ||||| || ||||| || ||||| | ||| || Sbjct 16525 AGACGCAACACAAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTGCGG 16466 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || || || || ||||| || || || || || | || ||| Sbjct 16465 CCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGGATGCCTTCC 16406 Query 34609 TTGTC 34613 ||||| Sbjct 16405 TTGTC 16401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314439247781168