Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1554 134 1e-26 seq1757 123 2e-23 seq14069 98.7 9e-16 seq52112 95.1 1e-14 >seq1554 Length=107351 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || |||||| | ||||| ||||| || ||||| Sbjct 13197 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGT 13256 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || ||||| ||||||||||| || || ||||| Sbjct 13257 GACACTATTGAAAATGTAAAAGCTAAGATCCAAGATAAAGAAGGCATCCCCCCAGATCAG 13316 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || ||| | ||||| || ||| |||| ||||||||| Sbjct 13317 CAACGTTTGATCTTCGCTGGAAAGCAACTTGAAGATGGTCGCACCCTTTCAGATTACAAC 13376 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || | ||| | || |||||| | || ||||| Sbjct 13377 ATCCAAAAGGAATCAACTCTCCATCTTGTCTTGCGTCTACGTGGTGG 13423 Score = 116 bits (128), Expect = 3e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || || ||||| || ||||| |||| | ||||||| || || ||||| |||||| Sbjct 17860 ATAACCCTTGAGGTAGAACCAAGCGACACAATTGAGAATGTAAAGACCAAAATCCAAGAC 17919 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || |||||||| || || ||||| || ||| | || | ||| || |||||| | ||||| Sbjct 17920 AAGGAAGGCATTCCCCCAGATCAGCAACGTCTTATCTTCGCTGGAAAACAACTTGAAGAT 17979 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | || | ||||| ||||||||||||||||| || ||| | ||| | || |||||| Sbjct 17980 GGCCGCACATTGTCCGACTACAACATTCAAAAGGAATCAACCCTCCATCTTGTCTTGCGT 18039 Query 27204 TTGCGGGGTGGCAT 27217 | || ||||| || Sbjct 18040 CTCCGTGGTGGTAT 18053 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || |||||| | ||||| ||||| || ||||| Sbjct 10073 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGT 10132 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||| || ||||||||||||||||| || || ||||| Sbjct 10133 GACACTATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 10192 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || ||| | ||||| | || | || || |||||| Sbjct 10193 CAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAAC 10252 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | ||| | || |||||| | || ||||| || Sbjct 10253 ATCCAGAAAGAGTCTACTCTCCATCTTGTCTTGCGTCTCCGTGGTGGTAT 10302 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 ||||| |||| || ||||| || ||||| ||| | ||||||| ||||| || Sbjct 9872 GGCAAAACTATCACCCTTGAGGTAGAACCAAGTGACACCATTGAGAATGTCAAGGCTAAG 9931 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 || ||||||||||||||||| || || ||||| || ||| | || | ||| || || ||| Sbjct 9932 ATCCAAGACAAAGAAGGCATCCCCCCAGATCAGCAACGTCTCATCTTCGCTGGAAAGCAA 9991 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 | ||||| | || | || || ||||||||||| || ||||| || | ||| | Sbjct 9992 CTTGAAGATGGCCGCACATTGTCAGACTACAACATTCAGAAAGAGTCCACTCTCCATCTT 10051 Query 27195 GTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||| | || ||||| || Sbjct 10052 GTCTTGCGTCTCCGTGGTGGTAT 10074 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 ||||| || || || ||||| ||| | ||||||| || ||| || || |||||| Sbjct 13005 ATTACCCTGGAGGTTGAACCAAGTGACACCATTGAGAATGTGAAAGCCAAGATCCAAGAC 13064 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || |||||||| || || ||||| || ||||| || | ||| || || ||| | ||||| Sbjct 13065 AAGGAAGGCATCCCCCCAGATCAGCAACGTTTGATCTTCGCTGGAAAGCAACTTGAAGAT 13124 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | || | || || ||||||||||||||||| || ||| | ||| | || || ||| Sbjct 13125 GGCCGCACATTGTCAGACTACAACATTCAAAAGGAATCTACCCTCCATCTTGTATTACGT 13184 Query 27204 TTGCGGGGTGGCAT 27217 | || ||||| || Sbjct 13185 CTTCGTGGTGGTAT 13198 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 ||||| |||| || || ||||| ||||| ||| | ||||||| || || || Sbjct 9122 GGCAAAACTATCACCCTAGAAGTAGAACCAAGTGACACAATTGAGAATGTTAAGGCTAAG 9181 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 || |||||||||||||| || || || ||||| |||||| | || | ||| || || ||| Sbjct 9182 ATCCAAGACAAAGAAGGTATCCCCCCAGATCAGCAGCGTCTTATCTTCGCTGGAAAGCAA 9241 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 | ||||| | || | ||||| |||||||| || || ||||| || | ||| | Sbjct 9242 CTTGAAGATGGCCGTACATTGTCCGACTACAACATCCAGAAAGAGTCCACTCTTCATCTT 9301 Query 27195 GTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||| | || ||||| || Sbjct 9302 GTCTTGCGTCTTCGTGGTGGTAT 9324 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 ||||| |||| || ||||| || ||||| || | ||||||| ||||| || Sbjct 10749 GGCAAAACTATCACCCTTGAGGTAGAACCAAGTGATACCATTGAGAATGTCAAGGCTAAG 10808 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 || ||||||||||||||||| || || ||||| || ||| | || | ||| || || ||| Sbjct 10809 ATCCAAGACAAAGAAGGCATCCCCCCAGATCAGCAACGTCTTATCTTCGCTGGAAAGCAA 10868 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 | ||||| | || | || || |||||||| || || ||||| || | ||| | Sbjct 10869 CTTGAAGATGGCCGTACATTGTCAGACTACAACATCCAGAAAGAGTCCACTCTCCATCTC 10928 Query 27195 GTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||| | || ||||| || Sbjct 10929 GTCTTGCGTCTCCGTGGTGGTAT 10951 >seq1757 Length=74305 Score = 123 bits (136), Expect = 2e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081 |||| || ||||| || ||||| ||| | ||||||| || || ||||| |||| Sbjct 25370 CTATCACCCTTGAGGTAGAACCAAGCGATACAATTGAGAATGTAAAGACCAAAATCCAAG 25311 Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141 |||| |||||||| || || ||||| || ||||| || | ||| || |||||| | |||| Sbjct 25310 ACAAGGAAGGCATTCCCCCAGATCAGCAACGTTTGATCTTCGCTGGAAAACAACTTGAAG 25251 Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGC 27201 | | || | ||||| |||||||||||||||||||| || | ||| | || |||| Sbjct 25250 ATGGCCGTACATTGTCCGACTACAACATTCAAAAGGAGTCTACTCTCCATCTTGTCTTGC 25191 Query 27202 GTTTGCGGGGTGGCAT 27217 || |||| ||||| || Sbjct 25190 GTCTGCGTGGTGGTAT 25175 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 ||||| ||||| || ||||| ||| | ||||| | || ||| ||| || |||||| Sbjct 23340 ATTACCCTTGAGGTTGAACCAAGTGACACTATTGAAAATGTAAAAGCAAAGATCCAAGAC 23281 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || |||||||| || || ||||| || ||| | || | ||| || || ||| | ||||| Sbjct 23280 AAGGAAGGCATTCCCCCAGATCAGCAACGTCTTATCTTCGCTGGAAAGCAACTTGAAGAT 23221 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 || ||| |||| ||||||||||| |||||||| || || | ||| | || |||||| Sbjct 23220 GGTCGCACCCTTTCAGATTACAACATCCAAAAGGAATCAACTCTCCATCTTGTCTTGCGT 23161 Query 27204 TTGCGGGGTGG 27214 || || ||||| Sbjct 23160 TTACGTGGTGG 23150 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || |||||| | ||||| ||||| || ||||| Sbjct 30432 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGT 30373 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||| || ||||||||||||||||| || || ||||| Sbjct 30372 GACACTATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 30313 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || ||| | ||||| | || | || || |||||| Sbjct 30312 CAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAAC 30253 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | ||| | || |||||| | || ||||| || Sbjct 30252 ATCCAGAAAGAGTCTACTCTCCATCTTGTCTTGCGTCTCCGTGGTGGTAT 30203 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 ||||| |||| || || ||||| ||||| ||| | ||||||| || || || Sbjct 32125 GGCAAAACTATCACCCTAGAAGTAGAACCAAGTGACACAATTGAGAATGTTAAGGCTAAG 32066 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 || |||||||||||||| || || || ||||| |||||| | || | ||| || || ||| Sbjct 32065 ATCCAAGACAAAGAAGGTATCCCCCCAGATCAGCAGCGTCTTATCTTCGCTGGAAAGCAA 32006 Query 27135 TTGGAAGACAGTTCGACCGTT-TCCGATTACAACATTCAAAAGGAGTCGACCTTACATTT 27193 | ||||| | ||| | || ||||| |||||||| || || ||||| || | ||| | Sbjct 32005 CTTGAAGA-TGGCCGAACATTGTCCGACTACAACATCCAGAAAGAGTCCACTCTTCATCT 31947 Query 27194 GGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||| | || ||||| || Sbjct 31946 TGTCTTGCGTCTTCGTGGTGGTAT 31923 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 ||||| |||| || ||||| || ||||| ||| | ||||||| ||||| || Sbjct 29746 GGCAAAACTATCACCCTTGAGGTAGAACCAAGTGACACCATTGAGAATGTCAAGGCTAAG 29687 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 || |||||||||||||| || || || ||||| || ||| | || | ||| || || || Sbjct 29686 ATCCAAGACAAAGAAGGTATCCCCCCAGATCAGCAACGTCTTATCTTCGCTGGAAAGCAG 29627 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 | ||||| | || | || || |||||||| || || ||||| || | ||| | Sbjct 29626 CTTGAAGATGGCCGCACATTGTCAGACTACAACATCCAGAAAGAGTCCACTCTCCATCTC 29567 Query 27195 GTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||| | || ||||| || Sbjct 29566 GTCTTGCGTCTCCGTGGTGGTAT 29544 >seq14069 Length=169739 Score = 98.7 bits (108), Expect = 9e-16 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707 |||| || |||||||| || |||||| | || |||||||||||||| || || ||| | Sbjct 33469 TAGGCTGCATGTGGTCCATCTGCGGTATTCATGATCAAGGATGGAAAGAACGACCAGTTT 33528 Query 135708 TTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759 |||||||| ||||||| |||||||||| || |||| || || ||||| || Sbjct 33529 TTGGCAAGGTTCGCTACATGAACTATGCAGGGTGTAAGAGGAAGTTTAACGT 33580 >seq52112 Length=262187 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707 |||| || |||||||| || |||||| | || || ||||||||||| || || ||| | Sbjct 60732 TAGGCTGCATGTGGTCCATCTGCGGTATTCATGACCAAGGATGGAAAGAACGACCAGTTT 60791 Query 135708 TTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759 |||||||| ||||||| |||||||||| || |||| || || ||||| || Sbjct 60792 TTGGCAAGGTTCGCTACATGAACTATGCAGGATGTAAGAGGAAGTTTAACGT 60843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434506880209920