Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1757 86.0 4e-12 seq1554 86.0 4e-12 >seq1757 Length=74305 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || || || ||||| || ||||| |||| || ||| | Sbjct 30432 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGT 30373 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || || ||| ||| || ||||||||||| | || || ||| Sbjct 30372 GACACTATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 30313 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | || ||||| ||||| ||| | || || | |||| ||||| || |||||| Sbjct 30312 CAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAAC 30253 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| |||||| ||| | ||| | || |||||| | ||||| || Sbjct 30252 ATCCAGAAAGAGTCTACTCTCCATCTTGTCTTGCGTCTCCGTGGTGG 30206 >seq1554 Length=107351 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || || || ||||| || ||||| |||| || ||| | Sbjct 10073 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGT 10132 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || || ||| ||| || ||||||||||| | || || ||| Sbjct 10133 GACACTATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 10192 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | || ||||| ||||| ||| | || || | |||| ||||| || |||||| Sbjct 10193 CAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAAC 10252 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| |||||| ||| | ||| | || |||||| | ||||| || Sbjct 10253 ATCCAGAAAGAGTCTACTCTCCATCTTGTCTTGCGTCTCCGTGGTGG 10299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355534100922192