Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1757 116 2e-21 seq1554 116 2e-21 >seq1757 Length=74305 Score = 116 bits (128), Expect = 2e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || || || || || ||||| | | Sbjct 30432 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGT 30373 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| ||||| ||| || ||||||||||| | || |||||||| Sbjct 30372 GACACTATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 30313 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || ||||| ||||| | ||||| || || |||||| Sbjct 30312 CAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAAC 30253 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 30252 ATCCAGAAAGAGTCTAC 30236 Score = 95.1 bits (104), Expect = 8e-15 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAA 23696 || ||||| ||||| || ||||| || | | ||||| |||| ||| |||| | || Sbjct 32125 GGCAAAACTATCACCCTAGAAGTAGAACCAAGTGACACAATTGAGAATGTTAAGGCTAAG 32066 Query 23697 AATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACA 23756 | | |||||||||||| | || |||||||| |||||| | || || || || || || Sbjct 32065 A-TCCAAGACAAAGAAGGTATCCCCCCAGATCAGCAGCGTCTTATCTTCGCTGGAAAGCA 32007 Query 23757 ACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 ||| ||||| | || || || ||| |||||||| || ||||||||||| Sbjct 32006 ACTTGAAGATGGCCGAACATTGTCCGACTACAACATCCAGAAAGAGTCCAC 31956 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || ||||| || || || ||||| ||||| || || || || | Sbjct 33227 AAAATGCAGATCTTTGTCAAAACACTAACTGGCAAAACTATCACCCTTGAGGTGGAACCA 33168 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || || ||||| || || | || ||||| Sbjct 33167 AGTGACACAATCGAGAATGTGAAAGC-CAAGATCCAAGACAAGGAGGGCATTCCCCCAGA 33109 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || ||| | || ||||| || || ||||| ||||| | ||||| || || || Sbjct 33108 TCAGCAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTA 33049 Query 23787 CAACATACAAAAAGAGTCCACATTACAT 23814 |||||| || || || |||||| | ||| Sbjct 33048 CAACATCCAGAAGGAATCCACACTCCAT 33021 >seq1554 Length=107351 Score = 116 bits (128), Expect = 2e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || || || || || ||||| | | Sbjct 10073 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGT 10132 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| ||||| ||| || ||||||||||| | || |||||||| Sbjct 10133 GACACTATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 10192 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || ||||| ||||| | ||||| || || |||||| Sbjct 10193 CAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAAC 10252 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 10253 ATCCAGAAAGAGTCTAC 10269 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || || || || || ||||| | | Sbjct 13197 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGT 13256 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| ||||| || || || |||||||| | || |||||||| Sbjct 13257 GACACTATTGAAAATGTAAAAGCTAAGATCCAAGATAAAGAAGGCATCCCCCCAGATCAG 13316 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || || || || ||||| ||||| | ||||| | ||||||||| Sbjct 13317 CAACGTTTGATCTTCGCTGGAAAGCAACTTGAAGATGGTCGCACCCTTTCAGATTACAAC 13376 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 13377 ATCCAAAAGGAATCAAC 13393 Score = 98.7 bits (108), Expect = 7e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || ||||| || || || ||||| ||||| || || || || | Sbjct 8015 AAAATGCAGATCTTTGTCAAAACACTAACTGGCAAAACTATCACCCTTGAGGTGGAACCA 8074 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | ||| | || || ||||| || || | || ||||| Sbjct 8075 AGTGACACAATTGAGAATGTGAAAGC-CAAGATCCAAGACAAGGAGGGCATTCCCCCAGA 8133 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || ||| | || ||||| || || ||||| ||||| | ||||| || || || Sbjct 8134 TCAGCAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCGGACTA 8193 Query 23787 CAACATACAAAAAGAGTCCACATTACAT 23814 |||||| || || || |||||| | ||| Sbjct 8194 CAACATCCAGAAGGAATCCACACTCCAT 8221 Score = 95.1 bits (104), Expect = 8e-15 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAA 23696 || ||||| ||||| || ||||| || | | ||||| |||| ||| |||| | || Sbjct 9122 GGCAAAACTATCACCCTAGAAGTAGAACCAAGTGACACAATTGAGAATGTTAAGGCTAAG 9181 Query 23697 AATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACA 23756 | | |||||||||||| | || |||||||| |||||| | || || || || || || Sbjct 9182 A-TCCAAGACAAAGAAGGTATCCCCCCAGATCAGCAGCGTCTTATCTTCGCTGGAAAGCA 9240 Query 23757 ACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 ||| ||||| | || || || ||| |||||||| || ||||||||||| Sbjct 9241 ACTTGAAGATGGCCGTACATTGTCCGACTACAACATCCAGAAAGAGTCCAC 9291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337697770933568