Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_031943.1 Length=40470 Score E Sequences producing significant alignments: (Bits) Value seq54356 104 6e-18 >seq54356 Length=14911 Score = 104 bits (114), Expect = 6e-18 Identities = 227/338 (67%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 38020 ACCCAGACTTGAAGTTCATGATTGTGTCGGCCTCAAAGGAGCGAGCCGATGCGAACTCCA 38079 |||| || ||||| ||||| |||| |||||||| ||||| || || ||| ||||| Sbjct 2782 ACCCTGAGCTGAAGATCATGGTTGTCTCGGCCTCCAAGGACCGCGCTGATCAATTCTCCA 2723 Query 38080 TCTTCATCAAGCGAATCATAGACCTAA--TGCCTCAGCTTCAGGAACTCAAACCTAAGCA 38137 || | | |||| | || | || | ||||| || || | || ||||| ||| Sbjct 2722 CATTTACCCAGCGTCTGATCG--CTGAGCTGCCTGGCCTCGAGCATCTAAAACCCAAGGG 2665 Query 38138 GGGACAGCGAGATGCAGTTATCAGCTTCGACGTTGGACCAGCCAAGCCAGACCACTCACC 38197 || ||| || | | ||| || || ||||| || |||||| | ||||| || Sbjct 2664 GGACCAGAGAAACTCCAAGATCGCATTTGATGTTGGGCCCGCCAAGGCGTCTCACTCGCC 2605 Query 38198 TTCGGTTAAGTCAGTTGGTATCACTGGTCAGTTGACTGGTAGTCGTGCTGACGTCCTGAT 38257 || || || || || || || || || ||| |||| || ||||||||| | ||||| Sbjct 2604 CTCAGTCAAATCTGTCGGCATTACAGGCCAGATGACGGGCTCTCGTGCTGATCTGCTGAT 2545 Query 38258 TGCCGATGACGTTGAGGTTCCGAACAACTCAGCGACTCAGGCTGCACGAGACCGTCTGTC 38317 || |||||||||||||| | ||||||| | || || ||| || ||| || Sbjct 2544 CGCTGATGACGTTGAGGTCCTGAACAACGCCGCAACCCAGCAAATGCGGGACAAGCTCGG 2485 Query 38318 AGAGCTTGTGAAAGAGTTCGACGCTATCCTGAAGCCGG 38355 ||| | || || || || ||||| ||||| ||||||| Sbjct 2484 CGAGGTGGTCAAGGAATTTGACGCCATCCTCAAGCCGG 2447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129266099454464