Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1554 114 9e-21 seq1757 105 5e-18 >seq1554 Length=107351 Score = 114 bits (126), Expect = 9e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||||||||||||||| | || ||| | || || || ||||| || || ||| Sbjct 13387 TCCTTTTGGATGTTGTAATCTGAAAGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAG 13328 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| |||||||||| || | ||||| || || ||||| || | || Sbjct 13327 ATCAAACGTTGCTGATCTGGGGGGATGCCTTCTTTATCTTGGATCTTAGCTTTTACATTT 13268 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||| | ||| ||||| | ||||| ||||| || ||||||||||| ||| Sbjct 13267 TCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACG 13208 Query 44327 AAGATTTGCAT 44337 ||||||||||| Sbjct 13207 AAGATTTGCAT 13197 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | ||| || || || || || ||| || ||||||||||| || Sbjct 10303 CATACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTC 10244 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | | ||| | || || || ||||| || |||||||| | ||| |||||||||| Sbjct 10243 TGACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGG 10184 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| || || ||||| ||||| | || | || ||||| | || Sbjct 10183 GGGGATGCCTTCTTTGTCTTGGATCTT-TGCTTTTACATTTTCAATAGTGTCACTTGGTT 10125 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | ||||| ||||| || ||||||||||| |||||||||||||| Sbjct 10124 CAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 10073 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | |||||| || ||||| ||| ||||| ||||||||||| || Sbjct 16538 CATTCCACCACGGAGACGCAACACAAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTC 16479 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | | ||| | || || || ||||| || || ||||||||||| |||||||||| Sbjct 16478 TGACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGG 16419 Query 44227 AGGCACACCTTCCTTTTC 44244 || | |||||||| || Sbjct 16418 GGGGATGCCTTCCTTGTC 16401 >seq1757 Length=74305 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | ||| || || || || || ||| || ||||||||||| || Sbjct 30202 CATACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCTTTCTGGATGTTGTAGTC 30261 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | | ||| | || || || ||||| || |||||||| | ||| |||||||||| Sbjct 30262 TGACAATGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGG 30321 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | ||||| || || ||||| ||| || | || | || ||||| | || Sbjct 30322 GGGGATGCCTTCTTTGTCTTGGATCTT-TGCTTTTACATTTTCAATAGTGTCACTTGGTT 30380 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | ||||| ||||| || ||||||||||| |||||||||||||| Sbjct 30381 CAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 30432 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | |||||| || ||||| ||| ||||| ||||||||||| || Sbjct 26442 CATTCCACCACGGAGACGCAACACAAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTC 26501 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | | || | || || || ||||| || |||||||| | ||| |||||||||| Sbjct 26502 GGACAATGTACGGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGG 26561 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| |||| | ||| | |||||||| | || Sbjct 26562 GGGAATGCCCTCCTTGTCTTGGATCTT-GGCTTTCACATTCTCAATGGTGTCACTTGGTT 26620 Query 44286 CCACCTCCACCGTAATCGTCTTTCC 44310 ||||||| | ||||| || || || Sbjct 26621 CCACCTCAAGGGTAATGGTTTTACC 26645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359658292656432