Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1757 143 6e-29 seq1554 141 2e-28 seq22013 113 1e-19 >seq1757 Length=74305 Score = 143 bits (158), Expect = 6e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||| ||||| |||||||| ||||| ||| |||||||| ||||| ||||| | Sbjct 29748 CAGGCAAAACTATCACCCTTGAGGTAGAACCAAGTGACACCATTGAGAATGTCAAGGCTA 29689 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| || ||||||||||| ||||| || || |||||||| ||||||||||| ||||| | Sbjct 29688 AGATCCAAGACAAAGAAGGTATCCCCCCAGATCAGCAACGTCTTATCTTCGCTGGAAAGC 29629 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 |||| |||||||| | || | | || || ||| |||| ||||| || || || |||| Sbjct 29628 AGCTTGAAGATGGCCGCACATTGTCAGACTACAACATCCAGAAAGAGTCCACTCTCCATC 29569 Query 178126 TTGTTTTGAGACTC 178139 | || ||| | ||| Sbjct 29568 TCGTCTTGCGTCTC 29555 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || || ||||| ||||| ||| ||| Sbjct 30429 CAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGTGAC 30370 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||| || ||||||||||| ||||| || || |||||| Sbjct 30369 ACTATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAGCAA 30310 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || ||||| || || |||||||| | || | | || || ||| || Sbjct 30309 CGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAACATC 30250 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || ||||| || || || |||||||| ||| | ||| Sbjct 30249 CAGAAAGAGTCTACTCTCCATCTTGTCTTGCGTCTC 30214 Score = 138 bits (152), Expect = 3e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||| ||||| |||||||| ||||| ||| |||||||| ||||| ||||| | Sbjct 31060 CAGGCAAAACTATCACCCTTGAGGTAGAACCAAGTGACACCATTGAGAATGTCAAGGCTA 31001 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| || ||||| ||||| ||||| || || |||||||| ||||||||||| ||||| | Sbjct 31000 AGATCCAAGACAAGGAAGGCATCCCCCCAGATCAGCAACGTCTTATCTTCGCTGGAAAGC 30941 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 | || |||||||| | || | | || || ||| |||| || ||||| ||||| |||| Sbjct 30940 AACTTGAAGATGGCCGCACATTGTCAGACTACAACATCCAGAAGGAATCCACACTCCATC 30881 Query 178126 TTGTTTTGAGACTC 178139 | ||| || | ||| Sbjct 30880 TCGTTCTGCGTCTC 30867 Score = 136 bits (150), Expect = 1e-26 Identities = 138/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013 || || ||||| ||||| ||| ||||| || || || || ||| |||||| || Sbjct 23343 ACCATTACCCTTGAGGTTGAACCAAGTGACACTATTGAAAATGTAAAAGCAAAGATCCAA 23284 Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| ||||| || || || || |||||||| ||||||||||| ||||| || || ||| Sbjct 23283 GACAAGGAAGGCATTCCCCCAGATCAGCAACGTCTTATCTTCGCTGGAAAGCAACTTGAA 23224 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| | || ||| | ||||| ||| ||||||| |||||||| || |||||||| ||| Sbjct 23223 GATGGTCGCACCCTTTCAGATTACAACATCCAAAAGGAATCAACTCTCCATCTTGTCTTG 23164 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||| ||||| |||||||| || || ||| ||||| || ||||| || || | Sbjct 32127 CAGGCAAAACTATCACCCTAGAAGTAGAACCAAGTGACACAATTGAGAATGTTAAGGCTA 32068 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| || ||||||||||| ||||| || || ||||| || ||||||||||| ||||| | Sbjct 32067 AGATCCAAGACAAAGAAGGTATCCCCCCAGATCAGCAGCGTCTTATCTTCGCTGGAAAGC 32008 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 | || |||||||| | || | |||| || ||| |||| ||||| || || || |||| Sbjct 32007 AACTTGAAGATGGCCGAACATTGTCCGACTACAACATCCAGAAAGAGTCCACTCTTCATC 31948 Query 178126 TTGTTTTG 178133 |||| ||| Sbjct 31947 TTGTCTTG 31940 >seq1554 Length=107351 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || || ||||| ||||| ||| ||| Sbjct 10076 CAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGTGAC 10135 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||| || ||||||||||| ||||| || || |||||| Sbjct 10136 ACTATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAGCAA 10195 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || ||||| || || |||||||| | || | | || || ||| || Sbjct 10196 CGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAACATC 10255 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || ||||| || || || |||||||| ||| | ||| Sbjct 10256 CAGAAAGAGTCTACTCTCCATCTTGTCTTGCGTCTC 10291 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||| ||||| |||||||| ||||| ||| |||||||| ||||| ||||| | Sbjct 9870 CAGGCAAAACTATCACCCTTGAGGTAGAACCAAGTGACACCATTGAGAATGTCAAGGCTA 9929 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| || ||||||||||| ||||| || || |||||||| || |||||||| ||||| | Sbjct 9930 AGATCCAAGACAAAGAAGGCATCCCCCCAGATCAGCAACGTCTCATCTTCGCTGGAAAGC 9989 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 | || |||||||| | || | | || || ||| | || ||||| || || || |||| Sbjct 9990 AACTTGAAGATGGCCGCACATTGTCAGACTACAACATTCAGAAAGAGTCCACTCTCCATC 10049 Query 178126 TTGTTTTGAGACTC 178139 |||| ||| | ||| Sbjct 10050 TTGTCTTGCGTCTC 10063 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||| ||||| |||||||| ||||| ||| || ||||| ||||| ||||| | Sbjct 10747 CAGGCAAAACTATCACCCTTGAGGTAGAACCAAGTGATACCATTGAGAATGTCAAGGCTA 10806 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| || ||||||||||| ||||| || || |||||||| ||||||||||| ||||| | Sbjct 10807 AGATCCAAGACAAAGAAGGCATCCCCCCAGATCAGCAACGTCTTATCTTCGCTGGAAAGC 10866 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 | || |||||||| | || | | || || ||| |||| ||||| || || || |||| Sbjct 10867 AACTTGAAGATGGCCGTACATTGTCAGACTACAACATCCAGAAAGAGTCCACTCTCCATC 10926 Query 178126 TTGTTTTGAGACTC 178139 | || ||| | ||| Sbjct 10927 TCGTCTTGCGTCTC 10940 Score = 134 bits (148), Expect = 3e-26 Identities = 151/198 (76%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGTCAA-A 178001 |||| ||||| || ||||| ||||| ||| ||| ||||| || ||||| || || | Sbjct 17849 CAGGTAAAACCATAACCCTTGAGGTAGAACCAAGC---GACACAATTGAGAATGTAAAGA 17905 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 | ||| || || ||||| ||||| || || || || |||||||| ||||||||||| ||| Sbjct 17906 CCAAA-ATCCAAGACAAGGAAGGCATTCCCCCAGATCAGCAACGTCTTATCTTCGCTGGA 17964 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 ||||| || |||||||| | || | |||| || ||| | ||||| |||||||| || Sbjct 17965 AAACAACTTGAAGATGGCCGCACATTGTCCGACTACAACATTCAAAAGGAATCAACCCTC 18024 Query 178122 CATCTTGTTTTGAGACTC 178139 |||||||| ||| | ||| Sbjct 18025 CATCTTGTCTTGCGTCTC 18042 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||| ||||| |||||||| || || ||| ||||| || ||||| || || | Sbjct 9120 CAGGCAAAACTATCACCCTAGAAGTAGAACCAAGTGACACAATTGAGAATGTTAAGGCTA 9179 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| || ||||||||||| ||||| || || ||||| || ||||||||||| ||||| | Sbjct 9180 AGATCCAAGACAAAGAAGGTATCCCCCCAGATCAGCAGCGTCTTATCTTCGCTGGAAAGC 9239 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 | || |||||||| | || | |||| || ||| |||| ||||| || || || |||| Sbjct 9240 AACTTGAAGATGGCCGTACATTGTCCGACTACAACATCCAGAAAGAGTCCACTCTTCATC 9299 Query 178126 TTGTTTTG 178133 |||| ||| Sbjct 9300 TTGTCTTG 9307 >seq22013 Length=127307 Score = 113 bits (124), Expect = 1e-19 Identities = 139/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACA 178003 |||| ||||| || ||||| | || ||| || || ||||||| ||||| || || Sbjct 37605 CAGGTAAAACCATTACCCTTGGTGTTGAA--CTGAGTGACACCATAGAGAATGTGAAGGC 37548 Query 178004 AAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 ||||| || ||||||||||| || || | || ||||| || ||| ||||||| || || Sbjct 37547 CAAGATCCAAGACAAAGAAGGCATTCCCTCAGATCAGCAGCGTCTTCTCTTCGCAGGTAA 37488 Query 178064 ACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 |||||| |||||||| || | | ||||| ||| | || |||||||| ||| | || Sbjct 37487 ACAGCTTGAAGATGGCTTGAATTTGTTGGATTACAACATTCAGAAAGAATCCACAATTCA 37428 Query 178124 TCTTGTTT 178131 |||||||| Sbjct 37427 TCTTGTTT 37420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202563755277024