Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq552 172 6e-38 seq513 84.2 2e-11 >seq552 Length=297145 Score = 172 bits (190), Expect = 6e-38 Identities = 479/726 (66%), Gaps = 13/726 (2%) Strand=Plus/Minus Query 16701 AAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTG 16760 |||| |||| |||||| || | ||| || || ||||| || |||||||| | | | Sbjct 246656 AAAAATTAGCTTTGCCTTCCAAAGAAATGTTTTCCATAAATGGGAAAGGATTTTTCGTTT 246597 Query 16761 AA-AATA-TTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATA 16818 | |||| |||| ||| |||| | | | | | || || || ||||| || || || Sbjct 246596 TATAATACTTTTCAAGT--CCCAATGCCACCAACAGCCTGTCGGCAACAAACTCAATGTA 246539 Query 16819 TTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAA 16878 | ||| | | ||| || || || | | ||| ||| | || | || | || Sbjct 246538 CTCTGCCATGGAGTGGCAATTGATACCCAACAAACGACACGGTAAGGCCCCTATCCAGAA 246479 Query 16879 TCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC-AACTCGTTCCTCGGACGGTG 16937 | || |||||| ||||||| || | ||| || || ||| ||||| || || Sbjct 246478 TTCTTTCTCTATGGCAACCGCATCACATACAAT-CTCGCTAACCCGTTCTCCGCTTGGCC 246420 Query 16938 TATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGC 16997 | || | | ||| ||| ||||| ||||| ||||| || || | || ||||| ||| Sbjct 246419 TCTGCCTTAAATGCGAAAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGG 246360 Query 16998 TGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATA 17057 || | || ||||||||||||| || ||||| |||| |||||| | |||||| | Sbjct 246359 AAATCAACTCATTAGAAAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAA 246300 Query 17058 TCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTT 17117 | | || |||| ||||| |||||||| |||||||| | |||||||| | | || || Sbjct 246299 TTGATGCAAACGCACCAGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTT 246240 Query 17118 CGGCGTACGTCGC-GT----CTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTG 17172 | | | || || || |||| | | |||||||| |||||| || |||| Sbjct 246239 CACCAAAAGTAGCTGTAGAACTTTTATCC--ATCCATTTAAATGCCCACTGTGCCTTTTT 246182 Query 17173 CTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGAT 17232 || | || | ||||| || || || || | ||||| || || | |||| | Sbjct 246181 TTTAACACAGGGGAAAGTTTCAATAGCATTGAAAACCTTCTCCTTCTCTCCTGGGTCCCT 246122 Query 17233 TATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTG 17292 || || || || || | || | ||||||||||||||| ||||| |||||||| || || Sbjct 246121 GATGTAAGTGTCAATTAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTG 246062 Query 17293 AAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAG 17352 ||||||||| || |||| || || | | ||| | ||| ||||| | ||| | | Sbjct 246061 AAATCCGTAGAAACATCTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAA 246002 Query 17353 ATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATA 17412 || || || ||||| || || || ||||| ||||||| | ||| |||||| | Sbjct 246001 GTTCTCTCCAACTATGCCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTG 245942 Query 17413 TTTTTC 17418 |||||| Sbjct 245941 TTTTTC 245936 >seq513 Length=1026617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 ||||| || || || || || ||||||| | || | || || || | ||||| | | Sbjct 199266 CCCACATAACCATTAGGGTCATTTCCATCCAGTTCAAACTTGTCATTGAGGTAGAGAGAC 199325 Query 119921 ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATA 119980 || ||| || |||||| | | |||| || || ||||| |||||||||||||| Sbjct 199326 ACCTGTAAAGCTTCTTCAGGGGATGCTGTCCACTCAAGGATTTTCTTAGCCCAGTACATC 199385 Query 119981 CGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAG 120021 || | | |||||||||||||||||| ||||||||||| Sbjct 199386 CGCAGAAAACCATGCATTTTACCTTCATTGACCATTTGAAG 199426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517533094804440