Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq552 183 3e-41 >seq552 Length=297145 Score = 183 bits (202), Expect = 3e-41 Identities = 407/606 (67%), Gaps = 15/606 (2%) Strand=Plus/Minus Query 16192 AAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGA 16251 ||| || || || || || || || || || |||||||| ||| || | || || || Sbjct 246403 AAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGA 246344 Query 16252 AAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCC 16311 ||| || | || |||||| |||| |||||| | ||| || || | ||||| | || Sbjct 246343 AAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACC 246284 Query 16312 CGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC--- 16368 || |||||||| ||||| |||| ||||| || | | || ||| | | ||||| Sbjct 246283 AGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGT 246224 Query 16369 --ATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATC 16426 | |||| | | |||||||| | |||| | || |||| ||| | ||| | Sbjct 246223 AGAACTTTTATCC--ATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAA 246166 Query 16427 GTTTCTATGGCCTTAAACAATTTCTCTTTTTC--CTGAATATCGATTATATACGTATCAA 16484 ||||| || || || || | ||||| || || ||| | | | || || || |||| Sbjct 246165 GTTTCAATAGCATTGAAAACCTTCTCCTTCTCTCCTGGGTCCC--TGATGTAAGTGTCAA 246108 Query 16485 TCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGC 16544 | | | || ||||||||| ||||| ||||| || ||||| || |||||||| ||||| | Sbjct 246107 TTAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAAC 246048 Query 16545 ATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGA 16604 ||| ||||| | | ||||| ||| || || | ||| ||| |||||| || | Sbjct 246047 ATCTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTCCAACTA 245988 Query 16605 TACCGTCACTTGCAGCAAAAAACGCCA--ATATGTGCTTAATGAAATATTTTTCGTCAGA 16662 | || ||||| || || || ||||||| | ||||| |||||| | |||||| | ||| Sbjct 245987 TGCCATCACTGGCTGCGAAGAACGCCAGAACATGTGA--AATGAACTGTTTTTCTTGAGA 245930 Query 16663 TGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAA 16722 | || | | |||||| ||| || || | ||||||||||| ||||||||| Sbjct 245929 GTTCAGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAA 245870 Query 16723 GCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 | ||||| | || || || | |||||| || ||| | | | || ||||| | ||| Sbjct 245869 GGATGCCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTTAGTGGAAACAAGAC 245810 Query 16783 GTATCT 16788 |||| Sbjct 245809 AAATCT 245804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511402042949560