Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq552 282 5e-71 seq1707 84.2 3e-11 >seq552 Length=297145 Score = 282 bits (312), Expect = 5e-71 Identities = 592/869 (68%), Gaps = 20/869 (2%) Strand=Plus/Minus Query 23872 AAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGAT-GGATTGGTAACA 23930 ||||||||| ||| ||||| || || || |||||||| |||| ||| ||||| | Sbjct 246656 AAAAATTAGCTTTGCCTTCCAAAGAAATGTTTTCCAT-AAATGGGAAAGGATTTTTCGTT 246598 Query 23931 TTATAGATTCTTTTAAA-TCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATA 23989 ||||| || ||||| || ||||||| | | || || || || |||||||| || || Sbjct 246597 TTATA-ATACTTTTCAAGTCCCAATGCCACCAACAGCCTGTCGGCAACAAACTCAATGTA 246539 Query 23990 TGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA-ACTGGAAGAGCCACAGTAAGAA 24048 | ||| | ||||| || || | | | || | ||| || | |||| Sbjct 246538 CTCTGCCATGGAGTGGCAATTGATACCCAACAAACGACACGGTAAGGCCCCTATCCAGAA 246479 Query 24049 ATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTG 24108 ||||| || || | ||||| || || ||| || || |||| | || || Sbjct 246478 -TTCTTTCTCTATGGCAACCGCATCACATACAATCTCGCTAACCCGTTCTCCGCTTGGCC 246420 Query 24109 GATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTAC 24168 | | |||||| ||| |||| ||||| ||||| ||||| || || ||||| || Sbjct 246419 TCTGCCTTAAATGCGAAAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGG 246360 Query 24169 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 24228 ||| || || || ||||| || || || ||||||||||| | || || | |||||| | Sbjct 246359 AAATCAACTCATTAGAAAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAA 246300 Query 24229 TGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTT 24288 | || ||||| | ||||| ||||| || || || || |||||||| |||| || ||||| Sbjct 246299 TTGATGCAAACGCACCAGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTT 246240 Query 24289 CTCCATAACCGGCGCTGT----CATGTATCCA--CTTTTGA--GCCCAATCGGCCTTCTT 24340 | ||| || | ||||| | | |||||| | ||| | ||||| | ||||| || Sbjct 246239 CACCAAAA--GTAGCTGTAGAACTTTTATCCATCCATTTAAATGCCCACTGTGCCTTTTT 246182 Query 24341 TTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTA--TCT 24398 ||| ||||| || | || || |||||||| || | | | || || | || || Sbjct 246181 TTTAACACAGGGGAAAGTTTCAATAGCATTGAAAACCTTCTCCTTCTC--TCCTGGGTCC 246124 Query 24399 TTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATT 24458 | | || || ||||| || |||| |||||||| || ||||||||||| ||||| ||| Sbjct 246123 CTGATGTAAGTGTCAATTAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATT 246064 Query 24459 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCT 24518 |||||||||||||||||||| ||||||| || |||| || | | || | ||| | Sbjct 246063 TGAAATCCGTAGAAACATCTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACC 246004 Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 || || || ||||| || ||||||||||| || ||||||| |||||| || || Sbjct 246003 AAGTTCTCTCCAACTATGCCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAAC 245944 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 24638 | |||||| | | | ||||| | |||||| | || || | ||||||||| Sbjct 245943 TGTTTTTCTTGAGAGTTCAGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCT 245884 Query 24639 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 24698 || || |||||||| |||||| | | || || || | ||||| |||||| | | | Sbjct 245883 TCGACCGTCCAAAAGGATGCCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTT 245824 Query 24699 ATTGGAAAAATAACAAATCTATTTGGATT 24727 | |||||| | |||||||| || ||||| Sbjct 245823 AGTGGAAACAAGACAAATCTGTTGGGATT 245795 >seq1707 Length=334361 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || ||||| ||||| || ||| ||| | || || || | | || Sbjct 217328 TCCAGCCATAGAAGTGCATGCTTGTCAGCTTGCCATAGTTAGGTTCAGCAAAGAACACAT 217387 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || ||||||||||| ||||| ||||| ||||| || ||||| | ||||| ||| Sbjct 217388 TGAATGACTGACTTTGATCAATGAATGCTCCTCTGTCAGCTGCCATATCTATGAGAGTCC 217447 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 | || | ||||||||||| || || || | | | |||| ||| || || Sbjct 217448 TCTGGGAAATTTCCCAAACTGTCTTGTACAATGGTTTAAGATCATCAGG 217496 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 54067 AAATAGATCTCTGGTTCTA--TGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAA 54123 |||||||||||| | || ||||| || |||||||| ||||| ||||| || | ||| Sbjct 223604 AAATAGATCTCTTCCTATACCTGTTCTTCTTTTCCTGTGTTCTTCCTTAAG-TCCAAGAA 223662 Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183 | | ||||| ||||| |||||||||||||| | | |||| || | ||||| Sbjct 223663 ATCAAAGATATCGCTGTGCCAGGGTTCCAAGTATATAGCAAAGGCTCCTGGTCTCTTGTT 223722 Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||||| || || | || || || || ||| ||||| | |||||| || | | ||| Sbjct 223723 GCCTCCTTGGTCAACATACCTTGCAGTCGCATTGTAAACCCGCAACATCGGTACCAGACC 223782 Query 54244 ATTGGATGCACCATTGGTC 54262 || || | ||||||||| Sbjct 223783 GTTTGAGACTCCATTGGTC 223801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593707254201840