Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq552 181 1e-40 seq754 116 4e-21 seq502 93.3 4e-14 >seq552 Length=297145 Score = 181 bits (200), Expect = 1e-40 Identities = 517/793 (65%), Gaps = 5/793 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| |||| | || || ||| | | || || | || || || | | ||| ||| Sbjct 245777 GAGCCGTTGCTTCAGGACAATCCCAACAGATTTGTCTTGTTTCCACTAAAGTTCCCTGAC 245836 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| | ||||| || | | ||| || || ||||| ||||| || ||||||||| Sbjct 245837 ATATGGAAATTCTACAAGAAATCTGTGGCATCCTTTTGGACGGTCGAAGAAGTGGACCTG 245896 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 || ||| ||| ||||| ||||| | || || ||||| || Sbjct 245897 GGAAATGACTTAGTCGATTGGGAAAAACTGAACTCTCAAGAAAAACAGTTCATTTCACAT 245956 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || ||||| || ||||| ||||| || ||||| || ||||| ||||||| | ||| Sbjct 245957 GTTCTGGCGTTCTTCGCAGCCAGTGATGGCATAGTTGGAGAGAACTTGGTCGAAAGGTTC 246016 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 || |||| | || || ||||||| | || |||||||| ||||| ||||||||||| Sbjct 246017 TATCGGGAGATACAAGTTCCCGAGGCAAGATGTTTCTACGGATTTCAAATCGCCATGGAA 246076 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAG 116935 ||| | ||||| |||||||| | | || ||||| ||| | | | | ||| Sbjct 246077 AACATTCACTCCGAAATGTACTGTCTGTTAATTGACACTTACATCAGGGACCCAGGAGAG 246136 Query 116936 AAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGG 116995 ||| | || || || || || || | || || || ||| | ||||| ||||| Sbjct 246137 AAGGAGAAGGTTTTCAATGCTATTGAAACTTTCCCCTGTGTTAAAAAAAAGGCACAGTGG 246196 Query 116996 GCGCTGCGCTGGATCGCCGGCAG----AGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTT 117051 || | ||||| | || | || | | || || || | | || || || Sbjct 246197 GCATTTAAATGGATGGATAAAAGTTCTACAG-CTACTTTTGGTGAAAGAGTTGTTGCGTT 246255 Query 117052 CGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAA 117111 ||||| |||||||| | ||||| || || || || | || |||||| ||||||| Sbjct 246256 TGCGGCTGTCGAGGGGATATTCTTCTCTGGTGCGTTTGCATCAATTTTTTGGATCAAGAA 246315 Query 117112 ACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCT 117171 | | ||||| ||||| || ||||| || || ||| | || ||||||||||| || || Sbjct 246316 AAGAGGCCTAATGCCTGGTCTGACATTTTCTAATGAGTTGATTTCCAGGGACGAAGGCCT 246375 Query 117172 GCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCG 117231 || || || ||||| || || | || |||||| |||| | || |||| | || Sbjct 246376 TCACTGTGATTTTGCATGCCTGATTTTTTCGCATTTAAGGCAGAGGCCAAGCGGAGAACG 246435 Query 117232 CGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCT 117291 || || ||||| || || ||||| ||||| ||| | ||| | | || | Sbjct 246436 GGTTAGCGAGATTGTATGTGATGCGGTTGCCATAGAGAAAGAATTCTGGATAGGGGCCTT 246495 Query 117292 GCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGC 117351 ||| ||| || |||| |||||||| | | ||| | | ||||| ||||| || || Sbjct 246496 ACCGTGTCGTTTGTTGGGTATCAATTGCCACTCCATGGCAGAGTACATTGAGTTTGTTGC 246555 Query 117352 CGACAGGCTGCTG 117364 |||||||||| || Sbjct 246556 CGACAGGCTGTTG 246568 >seq754 Length=972672 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || |||||||||||||| | || ||||| | | | Sbjct 126517 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAAACCATCACGCTTGAAGTCGAGCCAAGC 126458 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | ||| | ||| || || | |||||||| || |||||| | |||||| Sbjct 126457 GACTCCATTGAAAATGTGAAGACGAAGATCCAGGACAAAGAAGGTATCCCCCCAGACCAG 126398 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| || || ||| |||| || | ||||| |||| |||||||||| Sbjct 126397 CAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTCAGCGACTACAAC 126338 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || ||| |||| || || || || | || |||| || || Sbjct 126337 ATTCAAAAAGAGTCCACTCTTCACCTTGTTCTTCGTCTGAGAGGTGG 126291 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || ||||| ||||| | || || ||| | | | Sbjct 126973 ATGCAGATCTTCGTGAAGACTCTGACCGGTAAAACTATCACTCTTGAAGTTGAACCAAGC 126914 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||||| | | | | ||| || |||| |||||||| |||||||| | || || Sbjct 126913 GACAGTATCGAGAATGTGAAGACGAAGATTCAAGACAAAGAAGGCATCCCACCCGATCAA 126854 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | ||| |||||||| || || || | || || || | || || ||| Sbjct 126853 CAGCGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGCCGTACTCTGAGTGATTATAAC 126794 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| ||| |||| || || || || | ||||||||||| || Sbjct 126793 ATTCAGAAAGAGTCCACTCTTCACCTTGTTCTTCGCTTGAGGGGTGG 126747 >seq502 Length=1712060 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 116742 ATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATC 116801 ||||||||||||| || || || || ||||| || ||||| ||||| ||||| || || Sbjct 404389 ATTTCATCAAGCATGTTCTTGCTTTCTTCGCTGCTAGCGATGGCATTGTCAATGAAAACT 404448 Query 116802 TGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTC 116861 |||| ||| ||||| ||||| || ||||| | ||||| | || ||||| ||||| | Sbjct 404449 TGGTTGAGTGTTTCAGCCAGGAAGTCCAGGTTCCAGAGGCAAGATGTTTCTATGGCTTCC 404508 Query 116862 AGATCGCCATGGAG 116875 | || || || ||| Sbjct 404509 AAATAGCAATTGAG 404522 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 116742 ATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATC 116801 ||||||||||||| || || || || ||||| || ||||| ||||| ||||| || || Sbjct 408640 ATTTCATCAAGCATGTTCTTGCTTTCTTCGCTGCTAGCGATGGCATTGTCAATGAAAACT 408699 Query 116802 TGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTC 116861 |||| ||| ||||| ||||| || ||||| | ||||| | || ||||| ||||| | Sbjct 408700 TGGTTGAGTGTTTCAGCCAGGAAGTCCAGGTTCCAGAGGCAAGATGTTTCTATGGCTTCC 408759 Query 116862 AGATCGCCATGGAG 116875 | || || || ||| Sbjct 408760 AAATAGCAATTGAG 408773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206751016080