Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq754 122 8e-23 >seq754 Length=972672 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| |||||||| ||||| |||| ||| || ||| || || ||||| ||| Sbjct 126777 GTGGACTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCATCTTCAAGTTGTTTGCCA 126836 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | ||||||||||| |||||||| || ||||| || |||||| ||| || || Sbjct 126837 GCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCTTCTTTGTCTTGAATCTTCGTCTTC 126896 Query 118662 ACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | |||| |||| | || | || || || | || | ||||| ||||||||||| Sbjct 126897 ACATTCTCGATACTGTCGCTTGGT-TCAACTTCAAGAGTGATAGTTTTACCGGTCAGAGT 126955 Query 118721 TTTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 126956 CTTCACGAAGATCTGCATG 126974 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| |||| || | || ||||| || ||||| ||||| |||| Sbjct 126061 TACCGCCACGGAGACGCAAAACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGC 126120 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | | |||||| ||| || | ||| ||||| ||| |||| || | ||| || || || | Sbjct 126121 TAAGAGTGCGACCATCTTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGG 126180 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| || |||||| ||| ||| || || | ||| | || ||| | ||||| Sbjct 126181 GAATGCCTTCTTTGTCTTGAATCTTTGTCTTCACATTTTCAATGGAGTCGCTCGGCTCGA 126240 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || | || || ||||||||||| || || ||||||||||| Sbjct 126241 CTTCGAGCGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 126289 Score = 111 bits (122), Expect = 1e-19 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||||||||||||||| ||||| | |||||| ||| || | ||| ||||| Sbjct 126321 GTGGACTCTTTTTGAATGTTGTAGTCGCTGAGAGTGCGACCATCTTCCAACTGCTTTCCG 126380 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGT-T 118659 ||| |||| | | |||||| || || || || || || |||| ||| | | || || | Sbjct 126381 GCGAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGGA--TCTTCGTCT 126438 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | ||| | || ||| | |||||| || | || | |||||||||||||| | Sbjct 126439 TCACATTTTCAATGGAGTCGCTTGGCTCGACTTCAAGCGTGATGGTTTTGCCGGTCAGGG 126498 Query 118720 TTTTTACAAAAATCTGCAT 118738 |||| || || |||||||| Sbjct 126499 TTTTCACGAAGATCTGCAT 126517 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||||| || | || ||||| || ||||| ||||| |||| Sbjct 126517 TACCGCCACGGAGACGCAACACCAGATGAAGGGTCGACTCCTTCTGAATATTGTAGTCGC 126576 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | | |||||| ||| || | || || |||||| |||| || | ||| || ||||||| Sbjct 126577 TAAGAGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCGGGAG 126636 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| || |||||| || ||| || || | || | || ||| | ||| | Sbjct 126637 GGATGCCTTCTTTGTCTTGGATCTTTGTCTTCACATTCTCAATGGAGTCGCTCGGCTCAA 126696 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || ||||||| ||| || || ||||||||||| Sbjct 126697 CTTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTAACGAAAATCTGCAT 126745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433820179633636